#27 'fatal error' during compiling

[Chanbum Park]

Dear Dragan

I use Ubuntu 18.04 and have installed DAE Tools as follows:

1. activate new enviroment with python=3.6 in ubuntu 18.04 manchine.
2. Install dependencies
   "conda install numpy scipy matplotlib pyqt lxml pandas h5py openpyxl"
   "conda install -c menpo vtk=7"
   "pip install pygraphviz pymetis mayavi"
3. "~/Downloads/daetools-1.9.0-gnu_linux$ python setup.py install"
4. "~/Downloads/daetools-1.9.0-gnu_linux$ svn checkout svn://svn.code.sf.net/p/daetools/code daetools"
5. "~/Downloads/daetools-1.9.0-gnu_linux/daetools/trunk$sh install_dependencies_linux.sh"
6. "~/Downloads/daetools-1.9.0-gnu_linux/daetools/trunk$sh compile_libraries.sh {boost, boost_static, ref_blas_lapack, etc} => I compiled the libraries, boost, boost_static, ref_blas_lapack, etc, one after another; because, it gives me error when I type "sh compile_libraries.sh all". the last part of error is captured:

[...]
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:

DEAL_II_COMPONENT_MESH_CONVERTER
DEAL_II_COMPONENT_PARAMETER_GUI
DEAL_II_C_FLAGS
DEAL_II_WITH_MUMPS

-- Build files have been written to: /home/chanbum/Downloads/daetools-1.9.0-gnu_linux/daetools/trunk/deal.II

[*] Done!

compile_libraries.sh: 584: cd: can't cd to boost

1. After compiling the libraries one after another, I type in terminal as
   "~/Downloads/daetools-1.9.0-gnu_linux/daetools/trunk$sh compile.sh all", then 'fatal error' occurs, please see the last part messages below:

[...]
make[1]: Entering directory '/home/chanbum/Downloads/daetools-1.9.0-gnu_linux/daetools/trunk/fmi_ws'
rm -f release/dllmain.o release/auxiliary.o release/fmi_component.o release/daetools_fmi_cs.o
rm -f ~ core .core
make[1]: Leaving directory '/home/chanbum/Downloads/daetools-1.9.0-gnu_linux/daetools/trunk/fmi_ws'
make: Leaving directory '/home/chanbum/Downloads/daetools-1.9.0-gnu_linux/daetools/trunk'

[*] Compiling the project...

make: Entering directory '/home/chanbum/Downloads/daetools-1.9.0-gnu_linux/daetools/trunk'
cd Config/ && ( test -e Makefile || /usr/lib/qt5/bin/qmake -o Makefile /home/chanbum/Downloads/daetools-1.9.0-gnu_linux/daetools/trunk/Config/Config.pro CONFIG+=release CONFIG+=silent CONFIG+=shellCompile customPython=/usr/bin/python -spec linux-g++ ) && make -f Makefile
make[1]: Entering directory '/home/chanbum/Downloads/daetools-1.9.0-gnu_linux/daetools/trunk/Config'
mkdir -p -p ../daetools-package/daetools/solibs/Linux_x86_64/lib
mkdir -p -p ../daetools-package/daetools/solibs/Linux_x86_64/bin
mkdir -p -p ../daetools-package/daetools/solibs/Linux_x86_64/py27
mkdir -p -p ../daetools-dev/Linux_x86_64/bin
mkdir -p -p ../daetools-dev/include
mkdir -p -p ../daetools-dev/Linux_x86_64/lib
mkdir -p -p ../daetools-dev/Linux_x86_64/py27
compiling config.cpp
compiling dllmain.cpp
compiling stdafx.cpp
config.cpp:17:10: fatal error: boost/property_tree/ptree.hpp: No such file or directory

include <boost property_tree="" ptree.hpp=""></boost>

      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

compilation terminated.
Makefile:367: recipe for target 'release/config.o' failed
make[1]: *** [release/config.o] Error 1
make[1]: Leaving directory '/home/chanbum/Downloads/daetools-1.9.0-gnu_linux/daetools/trunk/Config'
Makefile:58: recipe for target 'sub-Config-make_first-ordered' failed
make: *** [sub-Config-make_first-ordered] Error 2

It seems to me that the script, go to "trunk/Config/" directory and try to compile; yet, the script cannot carry out

include <boost property_tree="" ptree.hpp="">, in config.cpp.</boost>

Should I modify qmake flag?
It would be really great if you can help me to solve this problem.

Best regards
Chanbum

[ciroki]

Hi Chanbum,

There are many changes since 1.9.0, incompatible and unfinished. Just checkout revision 755 and it should be fine.

Cheers
Dragan

[Chanbum Park]

Thank you for quick response!
Could you explain about "revision 755"? sorry about my naive question..

Best regards
Chanbum

[ciroki]

Hi,
No problem, you're welcome.
Just use svn checkout -r 755 svn://svn.code.sf.net/p/daetools/code daetools" to get revision 755. This is the version 1.9.0. Or, you can download the zip archive from http://www.daetools.com/downloads.html.

Cheers
Dragan

[Anonymous]

Hi Dragan

Thank you for your comments. However, I couldn't make it again.

The procedure I did this time as follows:

1. I got the source code via "svn checkout -r 755 svn://svn.code.sf.net/p/daetools/code daetools" and followed the same precedure as decrived above.

2. "sh compile_libraries.sh all"

3. "sh compile.sh all", it gives me error that
   adouble.h:44:10: fatal error: OpenCS/opencs.h: No such file or directory
   #include <opencs opencs.h="">
   ^~~~~~~~~~~~~~~~~
   compilation terminated.</opencs>

Is OpenCS/opencs.h compulsory?

Best regards
Chanbum

[ciroki]

Hi Chanbum,

No problem.
The compilation requires some headers which are located in OpenCS/build/include directory so compilation of OpenCS is required. Just do the following:

sh compile_libraries.sh opencs

after sh compile_libraries.sh all.
This should actually be included in the all option. Thank you for discovering it. I'll add it to the documenation too.

Cheers
Dragan

[Anonymous]

Hi Dragan

Thank you for your comments.

I have deleted the packages and tried to install again from scrach. I faced error during compiling libraries (especially deal.ii). Here is my precedure as follows:

1. svn checkout -r 755 svn://svn.code.sf.net/p/daetools/code daetools"
2. cd daetools/trunk/
3. sh install_dependencies_linux.sh
4. sh compile_libraries.sh boost ref_blas_lapack umfpack idas superlu superlu_mt bonmin nlopt coolprop trilinos deal.ii

Then, it gives me error during compiling dael.ii that:
[...]
home/chanbum/daetools/trunk/deal.II/include/deal.II/base/utilities.h:677:17: warning: this statement may fall through [-Wimplicit-fallthrough=]
++first;
^~
/home/chanbum/daetools/trunk/deal.II/include/deal.II/base/utilities.h:678:15: note: here
case 2:
^~~~
/home/chanbum/daetools/trunk/deal.II/include/deal.II/base/utilities.h:681:17: warning: this statement may fall through [-Wimplicit-fallthrough=]
++first;
^~
/home/chanbum/daetools/trunk/deal.II/include/deal.II/base/utilities.h:682:15: note: here
case 1:
^~~~
[ 73%] Built target obj_numerics_release
Makefile:129: recipe for target 'all' failed
make: *** [all] Error 2

The same error occurs, when I compile from daetools-1.9.0-gnu_linux.tar.gz file.

I thought that I can compile deal.ii previously. I don't know why deal.ii is not compiled..

Secondly, it says in the "Getting DAE Tools" page,
"After compilation, the shared libraries will be located in trunk/daetools-package/daetools/solibs directory."

When I compile individual libraries, for instance compiling boost by typing "sh compiling_libraries.sh boost", I couln't find any files in the directory (After compilation, the shared libraries will be located in trunk/daetools-package/daetools/solibs), only "init.py" and Linux_x86_64 directory.

Do I miss some intermediate steps to compile the libraries? By the way, when I type "sh compile_libraries.sh ipopt", it says, "Unrecognized solver: ipopt". Is that related?

Best regards
Chanbum