README

The Cylindrical Alignment App is a port / rewrite, from Java3D to JavaFX, and will utilize the NetBeans framework rather than the homegrown Swing infrastructure in place earlier. The former name of this application was "Cylindrical BLAST Viewer". However, any thing alignmenable can be presented using this project (BLAST, gene calls, ClustalW output, and even Microsoft Project files).

What is this repository for?

• This repo holds the code for Cylindrical Alignment App, which is a desktop program in Java, to show alignments of things to an anchor.
• 1.0

How do I get set up?

• Pull from the Git repos (containing this README)
• It is recommended that you use the NetBeans 8.2 IDE for this operation.
  ** Team / git / clone
  ** Select the main Cylindrical Alignment Viewer project in the projects pane (top left by default)
  ** Menu-click (right-mouse-click in Windows; other OS may vary)
  ** Select <run> to build and run the project using a preset sample input file</run>
• This application can read various XML formats, and GFF3 (if properly structured)
• Simply launch the app and browse to an example file. Examples should be included.
• Deployment is one of the prime reasons for switching to NetBeans. NetBeans can build out the deployment.

Contribution guidelines

• Writing tests
• Code review
• Other guidelines

Who do I talk to?

• Owned by Les Foster lfoster.se.be@gmail.com