Should be available now in rev. 16844. Reports only when "xlink-top-n" != 0. These
values will be inaccurate depending upon the resolution of the precursor window.
Smaller window -> more accurate xcorr.
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I think it would be better to not print those columns at all in that case.
Also, can you update the documentation for the xlink-top-n parameter so that it says that turning on this option will yield two additional features in the output, correpsonding to the scores of the two modified peptides?
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Should be available now in rev. 16844. Reports only when "xlink-top-n" != 0. These
values will be inaccurate depending upon the resolution of the precursor window.
Smaller window -> more accurate xcorr.
I see that these get reported, but when xlink-top-n is == 0, it looks like the columns are in the output but with values all set to 0:
http://noble.gs.washington.edu/~wnoble/proj/malaria/2015plasmo-xl/results/bill/2015-10-22vary-bin-size/20150918_Pfalc_0-3mMXlink_HCD-hiz_SCX4.bin1.0/search-for-xlinks.target.txt
I think it would be better to not print those columns at all in that case.
Also, can you update the documentation for the xlink-top-n parameter so that it says that turning on this option will yield two additional features in the output, correpsonding to the scores of the two modified peptides?