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#297 Add support for MGF input to Comet

post v2.0
open
Kaipo
crux-users (14)
2015-07-07
2015-07-07
William S Noble
No

This will require using Proteowizard for Comet.

Request is from wenbo wenbostar@gmail.com

Note that we will need to evaluate how much effort this is before deciding to implement it.

Related

Issues: #297

Discussion

  • William S Noble

    William S Noble - 2015-07-07
    • labels: --> crux-users
    • Description has changed:

    Diff:

    --- old
+++ new
@@ -1,3 +1,5 @@
 This will require using Proteowizard for Comet.

 Request is from wenbo <wenbostar@gmail.com>
+
+Note that we will need to evaluate how much effort this is before deciding to implement it.
     

  • William S Noble

    William S Noble - 2015-07-07

    Jimmy Eng wrote: "There was a separate request for Comet support of MGF files as input. So I chatted with Mike Hoopmann a few weeks ago about adding MGF read support to his MSToolkit library and it's something he's willing to tackle again once he gets back from vacation next week. So likely sometime in the near future, Comet will support MGF input. At that point, hopefully Comet in Crux will work for you as it will have MGF input and presumably mzIndentML output. I hesitate to give you an ETA on when this might happen but it will happen once Mike gets around to working on MSToolkit."

     

    • sjoemac

      sjoemac - 2015-07-07

      One way would be to use proteowizard to convert a spectrum file format to
      another format that MStoolkit currently accepts before calling comet.

      On Tue, Jul 7, 2015 at 3:55 PM, William S Noble wsnoble@users.sf.net
      wrote:

      Jimmy Eng wrote: "There was a separate request for Comet support of MGF
      files as input. So I chatted with Mike Hoopmann a few weeks ago about
      adding MGF read support to his MSToolkit library and it's something he's
      willing to tackle again once he gets back from vacation next week. So
      likely sometime in the near future, Comet will support MGF input. At that
      point, hopefully Comet in Crux will work for you as it will have MGF input
      and presumably mzIndentML output. I hesitate to give you an ETA on when
      this might happen but it will happen once Mike gets around to working on
      MSToolkit."

      ** [issues:#297] Add support for MGF input to Comet**

      Status: open
      Milestone: post v2.0
      Labels: crux-users
      Created: Tue Jul 07, 2015 06:54 PM UTC by William S Noble
      Last Updated: Tue Jul 07, 2015 06:55 PM UTC
      Owner: Kaipo

      This will require using Proteowizard for Comet.

      Request is from wenbo wenbostar@gmail.com

      Note that we will need to evaluate how much effort this is before deciding
      to implement it.

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      Related

      Issues: #297

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