[Cortexassembler-variation] install error
Brought to you by:
mariocaccamo,
zamin
From: w y <yw...@we...> - 2012-01-10 14:22:49
|
Dear Zam, I encounted an error when I tried to install cortex_var. I went to the gsl-1.15 directory and typed "make", there was no error. However, when I typed "make cortex_var" in the root directory, I got an error. Part of the information is as follows: mkdir -p bin; cc -Iinclude/cortex_var/core -Iinclude/basic -Iinclude/hash_table -Iinclude/cortex_var/many_colours -Iinclude/basic/event_encoding/base_encoding -Igsl-1.15 -Igsl-1.15/gsl -lm -lgsl -lgslcblas -m64 -Wall -O3 -DNUMBER_OF_BITFIELDS_IN_BINARY_KMER=1 -DNUMBER_OF_COLOURS=31 -o bin/cortex_var_""31"_c"31 src/obj/cortex_var/many_colours/genome_complexity.o src/obj/cortex_var/many_colours/global.o src/obj/cortex_var/many_colours/db_complex_genotyping.o src/obj/cortex_var/many_colours/cortex_var.o src/obj/cortex_var/many_colours/binary_kmer.o src/obj/cortex_var/many_colours/element.o src/obj/cortex_var/many_colours/seq.o src/obj/cortex_var/many_colours/hash_value.o src/obj/cortex_var/many_colours/hash_table.o src/obj/cortex_var/many_colours/dB_graph.o src/obj/cortex_var/many_colours/file_reader.o src/obj/cortex_var/many_colours/dB_graph_population.o src/obj/cortex_var/many_colours/db_variants.o src/obj/cortex_var/many_colours/cmd_line.o src/obj/cortex_var/many_colours/event_encoding.o src/obj/cortex_var/many_colours/graph_info.o src/obj/cortex_var/many_colours/db_differentiation.o src/obj/cortex_var/many_colours/model_selection.o src/obj/cortex_var/many_colours/maths.o /usr/bin/ld: cannot find -lgsl collect2: ld returned 1 exit status make: *** [cortex_var] Error 1 What's more, when I searched for the library gsl-bin, libgsl0ldbl, libgsl0-dev on the internet, I only got the .deb file. But my system is redhat linux: Linux node8 2.6.18-164.el5 #1 SMP Tue Aug 18 15:51:48 EDT 2009 x86_64 x86_64 x86_64 GNU/Linux. How should I deal with these problems? Any help will be appreciated. Andrew. |