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From: Kieren D. <ki...@di...> - 2006-08-13 11:10:35
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I'm just going through the process of installing Connotea-code onto with a fresh hand compiled Apache2/mod_perl on an iBook running os x 10.4 and note that a prereq Time::HR is not available on BSD or win32 style systems. I think (I'm not sure) that Time::HiRes would be an appropriate cross- platform replacement for this (certainly more widely used in the perl community anyway). Would this be correct? Anyway looks like a pretty interesting project. I'm looking forward to getting my teeth into it. -- Kieren Diment Centre for Leadership and Knoweldge Management School of Management, Marketing University of Wollongong Tel: +61 2 4221 3072 Mobile: 0403 929 895 Email: kd...@uo... |
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From: Martin F. <ma...@ne...> - 2006-08-11 19:57:41
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Benjamin Good wrote: >> Do you happen to know the query that got you that? > > q=astronomy I've manually taken care of this. I will have to design a systemic fix so these can't be output. Martin |
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From: <seb...@gm...> - 2006-08-11 19:18:05
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Hi Martin, On 8/11/06, Martin Flack <ma...@ne...> wrote: > We actually have a working NASA-ADS citation source module in the lab as > of yesterday, based largely on your prior advice, specifically in > building a hyperlink to fetch BibTeX. That's great news !!! > Their BibTeX output is actually > pretty good except for just needing to expand the journal name from a > TeX abbreviation. We will need to test our module so look for it early > next week. The complete list of TeX abbreviation can be found here: http://adsabs.harvard.edu/abs_doc/aas_macros.html I am looking forward testing this ! Best, S=E9bastien |
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From: Martin F. <ma...@ne...> - 2006-08-11 19:11:30
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Hi S=E9bastien, We actually have a working NASA-ADS citation source module in the lab as=20 of yesterday, based largely on your prior advice, specifically in=20 building a hyperlink to fetch BibTeX. Their BibTeX output is actually=20 pretty good except for just needing to expand the journal name from a=20 TeX abbreviation. We will need to test our module so look for it early=20 next week. Martin S=E9bastien Maret wrote: > Hi, >=20 > NASA-ADS indeed export in a number of formats. The full list is here: > http://doc.adsabs.harvard.edu/abs_doc/help_pages/results.html#Formattin= g_Options >=20 > RIS (RefMan ?) is supported: > http://adsabs.harvard.edu/cgi-bin/nph-bib_query?bibcode=3D1965ApJ...142= ..419P&data_type=3DREFMAN >=20 > Since Connotea imports RIS files, I guess that this format could be > used to implement the NASA-ADS plugin. Yet the output requires a bit a > processing in order to be understood by Connotea :-( NASA-ADS does not > seem to conform to RIS format specifications that I found here: > http://www.refman.com/support/risformat_sample_04.asp >=20 > The first field of NASA-ADS is .TY Journal, while it should be .TY > JOUR. The import works fine when I make the subsitution in the file. > Same applies to .TY Conference, that should be .TY CONF. An other > thing I 've noticed is that the multiple keywords are all in the same > field, i.e. >=20 > .KW keyword1 / keyword2, ... >=20 > while it should be >=20 > .KW keyword1 > .KW keyword2 > etc... >=20 > I've emailed NASA-ADS folks about this. >=20 > S=E9bastien >=20 > -----------------------------------------------------------------------= -- > Using Tomcat but need to do more? Need to support web services, securit= y? > Get stuff done quickly with pre-integrated technology to make your job = easier > Download IBM WebSphere Application Server v.1.0.1 based on Apache Geron= imo > http://sel.as-us.falkag.net/sel?cmd=3Dlnk&kid=3D120709&bid=3D263057&dat= =3D121642 > _______________________________________________ > Connotea-code-devel mailing list > Con...@li... > https://lists.sourceforge.net/lists/listinfo/connotea-code-devel |
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From: Martin F. <ma...@ne...> - 2006-08-11 19:06:22
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Benjamin Good wrote: >> Could you append " WWW::Connotea" to it to indicate a Web API >> compliant application? It's the string we use in the WWW::Connotea >> Perl library but it's a fast cheap hack to giving you "human" level >> access. > > As soon as I can figure out how I will. It seems dangerous though, what > is the point of implementing API-level throttling if a hacker/bot could > hide so easily? Why not implement separate or privileged account status > for web API users? We probably will; I'll talk to Ben (L) about using logged in status as part of the throttling, but he's apparently out today. It's all a bit of a game. You mention hackers and bots in one phrase but they are separate. Hackers can always apply for and receive whatever authorization they need. (I mean, put it this way, I don't know *you're* not a nefarious mortgage offer poster. ;-) Just kidding...) But what we're trying to stem the tide of is bots that are running all over the web, or even just social bookmarking sites, whose authors have not necessarily done research on Connotea in particular. A few simple obstacles such as these do help a lot with that crowd. Martin |
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From: <seb...@gm...> - 2006-08-11 18:49:58
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Hi, NASA-ADS indeed export in a number of formats. The full list is here: http://doc.adsabs.harvard.edu/abs_doc/help_pages/results.html#Formatting_Op= tions RIS (RefMan ?) is supported: http://adsabs.harvard.edu/cgi-bin/nph-bib_query?bibcode=3D1965ApJ...142..41= 9P&data_type=3DREFMAN Since Connotea imports RIS files, I guess that this format could be used to implement the NASA-ADS plugin. Yet the output requires a bit a processing in order to be understood by Connotea :-( NASA-ADS does not seem to conform to RIS format specifications that I found here: http://www.refman.com/support/risformat_sample_04.asp The first field of NASA-ADS is .TY Journal, while it should be .TY JOUR. The import works fine when I make the subsitution in the file. Same applies to .TY Conference, that should be .TY CONF. An other thing I 've noticed is that the multiple keywords are all in the same field, i.e. .KW keyword1 / keyword2, ... while it should be .KW keyword1 .KW keyword2 etc... I've emailed NASA-ADS folks about this. S=E9bastien |
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From: Benjamin G. <go...@in...> - 2006-08-11 18:36:15
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I haven't had any problem since adding that human browser emulator bit, thanks - much more fun now :) q=israel produces XML parsing error Caused by: org.xml.sax.SAXParseException: The entity "ldots" was referenced, but not declared. at org.apache.xerces.util.ErrorHandlerWrapper.createSAXParseException (Unknown Source) -Ben |
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From: Benjamin G. <go...@in...> - 2006-08-11 17:02:11
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>
> Do you have any control over your user agent string?
>
> Could you append " WWW::Connotea" to it to indicate a Web API
> compliant application? It's the string we use in the WWW::Connotea
> Perl library but it's a fast cheap hack to giving you "human" level
> access.
Missed this in my first Doc scan... Here it is for Java:
HttpURLConnection conno = (HttpURLConnection) connoU.openConnection();
conno.setRequestProperty("User-Agent", "Java/1.5.0_06/WWW::Connotea");
-Ben(G)
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From: Benjamin G. <go...@in...> - 2006-08-11 15:32:42
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On Aug 11, 2006, at 7:32 AM, Martin Flack wrote: > Benjamin Good wrote: >> Got another error of the same type as before: Character reference >> "" is an invalid XML character. Suppose I'll have to >> implement some error handling on this end. > > Do you happen to know the query that got you that? q=astronomy > >> Aside from that, I can't seem to go more than a few requests >> without hitting a 503. As far as I can tell I should not be >> hitting the throttling rules, but perhaps I am?? > > Do you have any control over your user agent string? I'm looking into it. I think the answer will eventually be yes, but its not obvious to me how to accomplish this yet. > > Could you append " WWW::Connotea" to it to indicate a Web API > compliant application? It's the string we use in the WWW::Connotea > Perl library but it's a fast cheap hack to giving you "human" level > access. As soon as I can figure out how I will. It seems dangerous though, what is the point of implementing API-level throttling if a hacker/ bot could hide so easily? Why not implement separate or privileged account status for web API users? -Ben(G) > > Martin > |
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From: Martin F. <ma...@ne...> - 2006-08-11 14:31:20
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Benjamin Good wrote: > Got another error of the same type as before: Character reference > "" is an invalid XML character. Suppose I'll have to implement some > error handling on this end. Do you happen to know the query that got you that? > Aside from that, I can't seem to go more than a few requests without > hitting a 503. As far as I can tell I should not be hitting the > throttling rules, but perhaps I am?? Do you have any control over your user agent string? Could you append " WWW::Connotea" to it to indicate a Web API compliant application? It's the string we use in the WWW::Connotea Perl library but it's a fast cheap hack to giving you "human" level access. Martin |
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From: Benjamin G. <go...@in...> - 2006-08-11 06:31:06
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Hi all, Got another error of the same type as before: Character reference "" is an invalid XML character. Suppose I'll have to implement some error handling on this end. Aside from that, I can't seem to go more than a few requests without hitting a 503. As far as I can tell I should not be hitting the throttling rules, but perhaps I am?? Out of curiosity, is anyone else making frequent hits to the web api? I'm getting a little concerned that I won't be able to produce the little application I had hoped for do to the current instability of the server. If some one else is making frequent calls without issue, then I must be screwing something up - otherwise.. I don't know - perhaps I should wait until an official release comes out? I totally understand that this is still a work in progress - its just so cool that I'm impatient to start playing with it (and this app would fit into a paper I'm working on quite nicely). thanks -Ben(G) |
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From: Benjamin G. <go...@in...> - 2006-08-10 19:13:34
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Hi Martin, I've only been actively working on this for the past few days so I guess I picked a bad time. I'm still getting the same XML parsing error. I'm getting the 503s from Java hits on the web API (making it tempting though sinful to scrape the Connotea pages directly).. I'm guessing you are working with it again at the moment because nothing is going through right now. The throttling rules seem fair to me, but it would be helpful if you could send a response that would indicate the reason for the failure (server restarting, throttling, karma..). THis would make it easier for diagnosis on this end. I don't know if you folks have the money, but it would be wonderful if there was a development server meant for web api access that was separate from the public one running the site. It might make it possible for to relax the rules a bit to allow the external developers more freedom. Just a thought. -Ben (G) On Aug 9, 2006, at 5:06 PM, Martin Flack wrote: > It's really bizarre, the database literally contains that data. > It's not an encoding issue (or perhaps you could say it's a lack of > escaping). > > It's true that XML can't display certain characters like 1 and 2 as > pure legal fiction of the specification, and it does get annoying > sometimes when someone else introduces those characters because it > always seems like such a completely irrelevant note in the spec.... > > For now I've just stripped them out because I can't believe the > author meant to have them in there. > > If you're getting 503's in the last couple hours it may be because > I'm restarting the production service unusually often. If you're > talking about a longer time span, it could be because of our bot > throttling. > > You should never be getting 503's in your browser. If you do please > tell us the browser type and version. If you are using an API such > as Java you may be running afoul of our freshly minted bot > throttling rules: > http://www.connotea.org/wiki/Throttling > Please let us know if you think our rules are too harsh. > > Martin > > Benjamin Good wrote: >> http://www.connotea.org/data/?q=vegf&num=100 <http:// >> www.connotea.org/data/?q=vegf&num=100> >> produces an xml parsing error: >> error on line 4595 at column 41556: xmlParseCharRef: invalid >> xmlChar value 1 >> My SAX parser dies with the message: >> Character reference "" is an invalid XML character >> -- >> I'm also getting accustomed to frequent 503 errors. Anything I >> should be doing to minimize this result ? >> thanks >> -Ben(G) > |
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From: Lund, B. <b....@na...> - 2006-08-10 14:09:49
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Hi All, We're about to begin work on the oft-requested feature to allow you to manually enter or edit bibliographic information for bookmarks. Instead of just unleashing an arbitrary version on you, I wanted to get some feedback on exactly how you'd like the feature to work. I'm talking in terms of buttons, clicks, and layouts here - exactly how it would suit you best, since it's these kind of details that you all know far better than me. I've described the proposed functions here: http://www.connotea.org/wiki/ProposedBibInfoEdit Please have a look, and edit the page if you think there's anything wrong, or something missing from the way this should work. It's actually a pretty basic feature, but it could potentially add extra time to the bookmarking process, so I want to make sure it's as easy to use as possible. Ta, Ben --- -- Ben Lund -- Product Development Manager -- Web Publishing -- Nature Publishing Group -- http://www.connotea.org/user/ben -- http://blogs.nature.com/wp/nascent/ ******************************************************************************** DISCLAIMER: This e-mail is confidential and should not be used by anyone who is not the original intended recipient. If you have received this e-mail in error please inform the sender and delete it from your mailbox or any other storage mechanism. Neither Macmillan Publishers Limited nor any of its agents accept liability for any statements made which are clearly the sender's own and not expressly made on behalf of Macmillan Publishers Limited or one of its agents. Please note that neither Macmillan Publishers Limited nor any of its agents accept any responsibility for viruses that may be contained in this e-mail or its attachments and it is your responsibility to scan the e-mail and attachments (if any). No contracts may be concluded on behalf of Macmillan Publishers Limited or its agents by means of e-mail communication. Macmillan Publishers Limited Registered in England and Wales with registered number 785998 Registered Office Brunel Road, Houndmills, Basingstoke RG21 6XS ******************************************************************************** |
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From: Martin F. <ma...@ne...> - 2006-08-10 00:04:51
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It's really bizarre, the database literally contains that data. It's not an encoding issue (or perhaps you could say it's a lack of escaping). It's true that XML can't display certain characters like 1 and 2 as pure legal fiction of the specification, and it does get annoying sometimes when someone else introduces those characters because it always seems like such a completely irrelevant note in the spec.... For now I've just stripped them out because I can't believe the author meant to have them in there. If you're getting 503's in the last couple hours it may be because I'm restarting the production service unusually often. If you're talking about a longer time span, it could be because of our bot throttling. You should never be getting 503's in your browser. If you do please tell us the browser type and version. If you are using an API such as Java you may be running afoul of our freshly minted bot throttling rules: http://www.connotea.org/wiki/Throttling Please let us know if you think our rules are too harsh. Martin Benjamin Good wrote: > http://www.connotea.org/data/?q=vegf&num=100 > <http://www.connotea.org/data/?q=vegf&num=100> > > produces an xml parsing error: > > error on line 4595 at column 41556: xmlParseCharRef: invalid xmlChar value 1 > > My SAX parser dies with the message: > Character reference "" is an invalid XML character > > -- > > I'm also getting accustomed to frequent 503 errors. Anything I should > be doing to minimize this result ? > > thanks > -Ben(G) |
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From: Benjamin G. <go...@in...> - 2006-08-09 23:44:08
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http://www.connotea.org/data/?q=vegf&num=100 produces an xml parsing error: error on line 4595 at column 41556: xmlParseCharRef: invalid xmlChar value 1 My SAX parser dies with the message: Character reference "" is an invalid XML character -- I'm also getting accustomed to frequent 503 errors. Anything I should be doing to minimize this result ? thanks -Ben(G) |
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From: Benjamin G. <go...@in...> - 2006-08-09 16:07:42
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OK, I'm making a lot of changes at the moment - give me a few days and I will send out a link to a publicly accessible repository. While I have your attention, perhaps I can trouble the list with a design pattern question. I would like to host my own website that allows people to explore Connotea (as well as other sites) using a tag cloud style interface. To make use of the web api, I need to send a user name and a password. Is there any way that I can send requests from my website that are authenticated without the need for me to process a user's information? At the moment, I can either use my own information (hopefully you won't shut down my account..) or request the info from the user - which is not ideal for privacy purposes. If I could somehow get the users info from their browser in an encrypted format, then, assuming they are logged in, perhaps I could use their info for the authentication without ever actually "seeing" it?? Simpler just to use my account and request that its not blocked if it starts to generate heavy load I guess. ? -Ben (G) On Aug 9, 2006, at 8:46 AM, Lund, Ben wrote: > Hi Ben (G), > > I would obviously love to see what you've put together. > > Ta, > B (L) > > > On 9/8/06 16:38, "Benjamin Good" <go...@in...> wrote: > >> Thanks Martin, >> >> Happy to know I wasn't misunderstanding (for once). In case anyone >> else is interested, I am working on some tag cloud generating >> software that will hopefully meet Ross Gayler's requests (http:// >> www.connotea.org/wiki/RequestUITagCloudAnywhere ) - which have >> probably been up for a while though I hadn't noticed them till now. >> >> If I was a better programmer and/or had more time to devote I would >> put it together into a proper library for sharing (for Java >> people).. but for now, if anyone wants to see what I have hacked >> together just let me know. If someone out there does meet the two >> criteria above, I would be happy to extend the library that they >> implement with whatever bits of my code that might be useful to the >> community. >> >> cheers >> -ben >> >> On Aug 9, 2006, at 8:26 AM, Martin Flack wrote: >> >>> Hi Ben, >>> >>> We are aware of this and it's moving steadily up our to-do list. >>> It's just a bug based on the SQL, and we're actually rewriting the >>> way that works. >>> >>> q does a full text index search on most of the fields in the >>> database. >>> >>> We don't have much in the way of official sorting options at the >>> moment. Usually it's by timestamp descending, but for q it actually >>> creates a score based on which field the data appeared in. >>> >>> We should have a fix for this soon. >>> >>> Cheers, >>> Martin >>> >>> Benjamin Good wrote: >>>> Hi, >>>> I would like to GET tags that are related to a search term. >>>> Trying the following results in an error (perhaps the developers >>>> have seen the auto-bug reports already). >>>> http://www.connotea.org/tags/?q=ontology&num=10 >>>> If I constrain the query to a particular user like: >>>> http://www.connotea.org/tags/user/bgood/?q=ontology&num=10 >>>> then things are peachy. >>>> What am I doing wrong? >>>> What exactly does the ?q=X search actually do ? >>>> Is there any way to return the results sorted in a particular way? >>>> How are the results currently sorted (if at all) ? >>>> Anyone else working with Java? >>>> thanks! >>>> -Ben >>>> ------------------------------------------------------------------- >>>> -- >>>> ---- >>>> Using Tomcat but need to do more? Need to support web services, >>>> security? >>>> Get stuff done quickly with pre-integrated technology to make your >>>> job easier >>>> Download IBM WebSphere Application Server v.1.0.1 based on Apache >>>> Geronimo >>>> http://sel.as-us.falkag.net/sel? >>>> cmd=lnk&kid=120709&bid=263057&dat=121642 >>>> _______________________________________________ >>>> Connotea-code-devel mailing list >>>> Con...@li... >>>> https://lists.sourceforge.net/lists/listinfo/connotea-code-devel >>> >> >> >> --------------------------------------------------------------------- >> ---- >> Using Tomcat but need to do more? Need to support web services, >> security? >> Get stuff done quickly with pre-integrated technology to make your >> job easier >> Download IBM WebSphere Application Server v.1.0.1 based on Apache >> Geronimo >> http://sel.as-us.falkag.net/sel? >> cmd=lnk&kid=120709&bid=263057&dat=121642 >> _______________________________________________ >> Connotea-code-devel mailing list >> Con...@li... >> https://lists.sourceforge.net/lists/listinfo/connotea-code-devel > > ********************************************************************** > ********** > DISCLAIMER: This e-mail is confidential and should not be used by > anyone who is > not the original intended recipient. If you have received this e- > mail in error > please inform the sender and delete it from your mailbox or any > other storage > mechanism. Neither Macmillan Publishers Limited nor any of its > agents accept > liability for any statements made which are clearly the sender's > own and not > expressly made on behalf of Macmillan Publishers Limited or one of > its agents. > Please note that neither Macmillan Publishers Limited nor any of > its agents > accept any responsibility for viruses that may be contained in this > e-mail or > its attachments and it is your responsibility to scan the e-mail and > attachments (if any). No contracts may be concluded on behalf of > Macmillan > Publishers Limited or its agents by means of e-mail communication. > Macmillan > Publishers Limited Registered in England and Wales with registered > number 785998 > Registered Office Brunel Road, Houndmills, Basingstoke RG21 6XS > ********************************************************************** > ********** |
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From: Lund, B. <b....@na...> - 2006-08-09 15:46:36
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Hi Ben (G), I would obviously love to see what you've put together. Ta, B (L) On 9/8/06 16:38, "Benjamin Good" <go...@in...> wrote: > Thanks Martin, > > Happy to know I wasn't misunderstanding (for once). In case anyone > else is interested, I am working on some tag cloud generating > software that will hopefully meet Ross Gayler's requests (http:// > www.connotea.org/wiki/RequestUITagCloudAnywhere ) - which have > probably been up for a while though I hadn't noticed them till now. > > If I was a better programmer and/or had more time to devote I would > put it together into a proper library for sharing (for Java > people).. but for now, if anyone wants to see what I have hacked > together just let me know. If someone out there does meet the two > criteria above, I would be happy to extend the library that they > implement with whatever bits of my code that might be useful to the > community. > > cheers > -ben > > On Aug 9, 2006, at 8:26 AM, Martin Flack wrote: > >> Hi Ben, >> >> We are aware of this and it's moving steadily up our to-do list. >> It's just a bug based on the SQL, and we're actually rewriting the >> way that works. >> >> q does a full text index search on most of the fields in the database. >> >> We don't have much in the way of official sorting options at the >> moment. Usually it's by timestamp descending, but for q it actually >> creates a score based on which field the data appeared in. >> >> We should have a fix for this soon. >> >> Cheers, >> Martin >> >> Benjamin Good wrote: >>> Hi, >>> I would like to GET tags that are related to a search term. >>> Trying the following results in an error (perhaps the developers >>> have seen the auto-bug reports already). >>> http://www.connotea.org/tags/?q=ontology&num=10 >>> If I constrain the query to a particular user like: >>> http://www.connotea.org/tags/user/bgood/?q=ontology&num=10 >>> then things are peachy. >>> What am I doing wrong? >>> What exactly does the ?q=X search actually do ? >>> Is there any way to return the results sorted in a particular way? >>> How are the results currently sorted (if at all) ? >>> Anyone else working with Java? >>> thanks! >>> -Ben >>> --------------------------------------------------------------------- >>> ---- >>> Using Tomcat but need to do more? Need to support web services, >>> security? >>> Get stuff done quickly with pre-integrated technology to make your >>> job easier >>> Download IBM WebSphere Application Server v.1.0.1 based on Apache >>> Geronimo >>> http://sel.as-us.falkag.net/sel? >>> cmd=lnk&kid=120709&bid=263057&dat=121642 >>> _______________________________________________ >>> Connotea-code-devel mailing list >>> Con...@li... >>> https://lists.sourceforge.net/lists/listinfo/connotea-code-devel >> > > > ------------------------------------------------------------------------- > Using Tomcat but need to do more? Need to support web services, security? > Get stuff done quickly with pre-integrated technology to make your job easier > Download IBM WebSphere Application Server v.1.0.1 based on Apache Geronimo > http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642 > _______________________________________________ > Connotea-code-devel mailing list > Con...@li... > https://lists.sourceforge.net/lists/listinfo/connotea-code-devel ******************************************************************************** DISCLAIMER: This e-mail is confidential and should not be used by anyone who is not the original intended recipient. If you have received this e-mail in error please inform the sender and delete it from your mailbox or any other storage mechanism. Neither Macmillan Publishers Limited nor any of its agents accept liability for any statements made which are clearly the sender's own and not expressly made on behalf of Macmillan Publishers Limited or one of its agents. Please note that neither Macmillan Publishers Limited nor any of its agents accept any responsibility for viruses that may be contained in this e-mail or its attachments and it is your responsibility to scan the e-mail and attachments (if any). No contracts may be concluded on behalf of Macmillan Publishers Limited or its agents by means of e-mail communication. Macmillan Publishers Limited Registered in England and Wales with registered number 785998 Registered Office Brunel Road, Houndmills, Basingstoke RG21 6XS ******************************************************************************** |
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From: Benjamin G. <go...@in...> - 2006-08-09 15:40:38
|
Thanks Martin, Happy to know I wasn't misunderstanding (for once). In case anyone else is interested, I am working on some tag cloud generating software that will hopefully meet Ross Gayler's requests (http:// www.connotea.org/wiki/RequestUITagCloudAnywhere ) - which have probably been up for a while though I hadn't noticed them till now. If I was a better programmer and/or had more time to devote I would put it together into a proper library for sharing (for Java people).. but for now, if anyone wants to see what I have hacked together just let me know. If someone out there does meet the two criteria above, I would be happy to extend the library that they implement with whatever bits of my code that might be useful to the community. cheers -ben On Aug 9, 2006, at 8:26 AM, Martin Flack wrote: > Hi Ben, > > We are aware of this and it's moving steadily up our to-do list. > It's just a bug based on the SQL, and we're actually rewriting the > way that works. > > q does a full text index search on most of the fields in the database. > > We don't have much in the way of official sorting options at the > moment. Usually it's by timestamp descending, but for q it actually > creates a score based on which field the data appeared in. > > We should have a fix for this soon. > > Cheers, > Martin > > Benjamin Good wrote: >> Hi, >> I would like to GET tags that are related to a search term. >> Trying the following results in an error (perhaps the developers >> have seen the auto-bug reports already). >> http://www.connotea.org/tags/?q=ontology&num=10 >> If I constrain the query to a particular user like: >> http://www.connotea.org/tags/user/bgood/?q=ontology&num=10 >> then things are peachy. >> What am I doing wrong? >> What exactly does the ?q=X search actually do ? >> Is there any way to return the results sorted in a particular way? >> How are the results currently sorted (if at all) ? >> Anyone else working with Java? >> thanks! >> -Ben >> --------------------------------------------------------------------- >> ---- >> Using Tomcat but need to do more? Need to support web services, >> security? >> Get stuff done quickly with pre-integrated technology to make your >> job easier >> Download IBM WebSphere Application Server v.1.0.1 based on Apache >> Geronimo >> http://sel.as-us.falkag.net/sel? >> cmd=lnk&kid=120709&bid=263057&dat=121642 >> _______________________________________________ >> Connotea-code-devel mailing list >> Con...@li... >> https://lists.sourceforge.net/lists/listinfo/connotea-code-devel > |
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From: Benjamin G. <go...@in...> - 2006-08-09 15:33:49
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Hi Robert, I'm actually using an RDF processing library called Jena (http:// jena.sourceforge.net/ ) to work with the results data. Its probably much slower than almost anything else.. but it is very flexible and I have to use it for other work so I'll probably stick with it. I was hoping to add sorting conditions directly to my request so that I could limit the amount of results based on my own criteria. For example - give me the top 100 tags according to frequency of use or recency or number of users etc. thanks though! -Ben On Aug 9, 2006, at 8:17 AM, Robert Muetzelfeldt wrote: > Hi Ben, > > I don't know the answer to your basic question, nor do I work with > Java! However, you do ask about sorting. I've been using XSLT > to do all the processing of the Connotea result XML, and sorting by > any criterion is a breeze. Are you using XSLT at all for > processing the result XML, or doing it using the Java DOM API? If > you've not used XSLT and are tempted, feel free to drop me a line. > Cheers, > Robert > > Benjamin Good wrote: >> Hi, >> >> I would like to GET tags that are related to a search term. >> Trying the following results in an error (perhaps the developers >> have seen the auto-bug reports already). >> >> http://www.connotea.org/tags/?q=ontology&num=10 >> >> If I constrain the query to a particular user like: >> >> http://www.connotea.org/tags/user/bgood/?q=ontology&num=10 >> >> then things are peachy. >> >> What am I doing wrong? >> What exactly does the ?q=X search actually do ? >> Is there any way to return the results sorted in a particular way? >> How are the results currently sorted (if at all) ? >> Anyone else working with Java? >> >> thanks! >> -Ben >> >> >> --------------------------------------------------------------------- >> ---- >> Using Tomcat but need to do more? Need to support web services, >> security? >> Get stuff done quickly with pre-integrated technology to make your >> job easier >> Download IBM WebSphere Application Server v.1.0.1 based on Apache >> Geronimo >> http://sel.as-us.falkag.net/sel? >> cmd=lnk&kid=120709&bid=263057&dat=121642 >> _______________________________________________ >> Connotea-code-devel mailing list >> Con...@li... >> https://lists.sourceforge.net/lists/listinfo/connotea-code-devel >> > |
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From: Martin F. <ma...@ne...> - 2006-08-09 15:25:38
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Hi Ben, We are aware of this and it's moving steadily up our to-do list. It's just a bug based on the SQL, and we're actually rewriting the way that works. q does a full text index search on most of the fields in the database. We don't have much in the way of official sorting options at the moment. Usually it's by timestamp descending, but for q it actually creates a score based on which field the data appeared in. We should have a fix for this soon. Cheers, Martin Benjamin Good wrote: > Hi, > > I would like to GET tags that are related to a search term. Trying > the following results in an error (perhaps the developers have seen > the auto-bug reports already). > > http://www.connotea.org/tags/?q=ontology&num=10 > > If I constrain the query to a particular user like: > > http://www.connotea.org/tags/user/bgood/?q=ontology&num=10 > > then things are peachy. > > What am I doing wrong? > What exactly does the ?q=X search actually do ? > Is there any way to return the results sorted in a particular way? > How are the results currently sorted (if at all) ? > Anyone else working with Java? > > thanks! > -Ben > > > ------------------------------------------------------------------------- > Using Tomcat but need to do more? Need to support web services, security? > Get stuff done quickly with pre-integrated technology to make your job easier > Download IBM WebSphere Application Server v.1.0.1 based on Apache Geronimo > http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642 > _______________________________________________ > Connotea-code-devel mailing list > Con...@li... > https://lists.sourceforge.net/lists/listinfo/connotea-code-devel |
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From: Benjamin G. <go...@in...> - 2006-08-09 15:01:32
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Hi, I would like to GET tags that are related to a search term. Trying the following results in an error (perhaps the developers have seen the auto-bug reports already). http://www.connotea.org/tags/?q=ontology&num=10 If I constrain the query to a particular user like: http://www.connotea.org/tags/user/bgood/?q=ontology&num=10 then things are peachy. What am I doing wrong? What exactly does the ?q=X search actually do ? Is there any way to return the results sorted in a particular way? How are the results currently sorted (if at all) ? Anyone else working with Java? thanks! -Ben |
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From: Lund, B. <b....@na...> - 2006-08-09 10:51:36
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Hi Robert, Thanks for following up. > this message reminds me of the arxiv plugin. is this already > implemented? It's written, but not released yet. We need to test it against a long list of URLs before releasing it, but unfortunately our testing is running foul of arXiv's fighting-back-against-the-robots policy. I'm trying to sort this out, but apologies for the delay. Ta, Ben On 8/8/06 18:14, "Robert Forkel" <xro...@go...> wrote: > hi all, > this message reminds me of the arxiv plugin. is this already > implemented? i didn't see anything mentioned in the connotea news > section. > if it is not, i'd volunteer again. > regards, > robert >=20 > On 8/7/06, Lund, Ben <b....@na...> wrote: >> Hi Sebastien, >>=20 >> Thanks for this. I don't suppose you have Perl BibTeX parsing skills, a= nd >> are willing to help out, do you? >>=20 >> We've experimented with the CPAN Text::BibTeX module ( >> http://search.cpan.org/~ambs/Text-BibTeX-0.36/BibTeX.pm), but it has pro= ved >> to have problems coping with the variety of BibTeX files that are out th= ere >> in the wild. >>=20 >> We'll test the NASA-ADS BibTeX, and if it seems to parse well, we should= be >> able to create a plug-in fairly quickly. >>=20 >> Ta, >> Ben >>=20 >> On 4/8/06 05:50, "S=E9bastien Maret" <seb...@gm...> wrote: >>=20 >>> I have just submitted a request on the wiki for a plugin to import >>> citations in Connotea from NASA-ADS abstract service. >>>=20 >>> Here are some hints on how this pluging could be implemented: >>>=20 >>> A typical bibliographic entry look like that: >>> http://adsabs.harvard.edu/cgi-bin/nph-bib_query?bibcode=3D1965ApJ...142..= 419P >>>=20 >>>> From the bibcode in the URL, its is possible to retrieve the an XML >>> file containing all needed entries: >>> http://adsabs.harvard.edu/cgi-bin/nph-bib_query?bibcode=3D1965ApJ...142..= 419P& >>> am >>> p;data_type=3DXML >>>=20 >>> Alternatively, it is possible to retrieve a BibTeX entry: >>> http://adsabs.harvard.edu/cgi-bin/nph-bib_query?bibcode=3D1965ApJ...142..= 419P& >>> am >>> p;data_type=3DBIBTEX >>>=20 >>> Sebastien >>>=20 >>> -----------------------------------------------------------------------= -- >>> Take Surveys. Earn Cash. Influence the Future of IT >>> Join SourceForge.net's Techsay panel and you'll get the chance to share= your >>> opinions on IT & business topics through brief surveys -- and earn cash >>> http://www.techsay.com/default.php?page=3Djoin.php&p=3Dsourceforge&CID=3DDEVD= EV >>> _______________________________________________ >>> Connotea-code-devel mailing list >>> Con...@li... >>> https://lists.sourceforge.net/lists/listinfo/connotea-code-devel >>=20 >> ************************************************************************= ***** >> *** >> DISCLAIMER: This e-mail is confidential and should not be used by anyone= who >> is >> not the original intended recipient. If you have received this e-mail in >> error >> please inform the sender and delete it from your mailbox or any other st= orage >> mechanism. Neither Macmillan Publishers Limited nor any of its agents ac= cept >> liability for any statements made which are clearly the sender's own and= not >> expressly made on behalf of Macmillan Publishers Limited or one of its >> agents. >> Please note that neither Macmillan Publishers Limited nor any of its age= nts >> accept any responsibility for viruses that may be contained in this e-ma= il or >> its attachments and it is your responsibility to scan the e-mail and >> attachments (if any). No contracts may be concluded on behalf of Macmill= an >> Publishers Limited or its agents by means of e-mail communication. Macmi= llan >> Publishers Limited Registered in England and Wales with registered numbe= r >> 785998 >> Registered Office Brunel Road, Houndmills, Basingstoke RG21 6XS >> ************************************************************************= ***** >> *** >>=20 >> ------------------------------------------------------------------------= - >> Take Surveys. Earn Cash. Influence the Future of IT >> Join SourceForge.net's Techsay panel and you'll get the chance to share = your >> opinions on IT & business topics through brief surveys -- and earn cash >> http://www.techsay.com/default.php?page=3Djoin.php&p=3Dsourceforge&CID=3DDEVDE= V >> _______________________________________________ >> Connotea-code-devel mailing list >> Con...@li... >> https://lists.sourceforge.net/lists/listinfo/connotea-code-devel >>=20 >=20 > ------------------------------------------------------------------------- > Using Tomcat but need to do more? Need to support web services, security? > Get stuff done quickly with pre-integrated technology to make your job ea= sier > Download IBM WebSphere Application Server v.1.0.1 based on Apache Geronim= o > http://sel.as-us.falkag.net/sel?cmd=3Dlnk&kid=3D120709&bid=3D263057&dat=3D121642 > _______________________________________________ > Connotea-code-devel mailing list > Con...@li... > https://lists.sourceforge.net/lists/listinfo/connotea-code-devel |
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From: Robert F. <xro...@go...> - 2006-08-08 17:14:40
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hi all, this message reminds me of the arxiv plugin. is this already implemented? i didn't see anything mentioned in the connotea news section. if it is not, i'd volunteer again. regards, robert On 8/7/06, Lund, Ben <b....@na...> wrote: > Hi Sebastien, > > Thanks for this. I don't suppose you have Perl BibTeX parsing skills, an= d > are willing to help out, do you? > > We've experimented with the CPAN Text::BibTeX module ( > http://search.cpan.org/~ambs/Text-BibTeX-0.36/BibTeX.pm), but it has prov= ed > to have problems coping with the variety of BibTeX files that are out the= re > in the wild. > > We'll test the NASA-ADS BibTeX, and if it seems to parse well, we should = be > able to create a plug-in fairly quickly. > > Ta, > Ben > > On 4/8/06 05:50, "S=E9bastien Maret" <seb...@gm...> wrote: > > > I have just submitted a request on the wiki for a plugin to import > > citations in Connotea from NASA-ADS abstract service. > > > > Here are some hints on how this pluging could be implemented: > > > > A typical bibliographic entry look like that: > > http://adsabs.harvard.edu/cgi-bin/nph-bib_query?bibcode=3D1965ApJ...142= ..419P > > > >> From the bibcode in the URL, its is possible to retrieve the an XML > > file containing all needed entries: > > http://adsabs.harvard.edu/cgi-bin/nph-bib_query?bibcode=3D1965ApJ...142= ..419P&am > > p;data_type=3DXML > > > > Alternatively, it is possible to retrieve a BibTeX entry: > > http://adsabs.harvard.edu/cgi-bin/nph-bib_query?bibcode=3D1965ApJ...142= ..419P&am > > p;data_type=3DBIBTEX > > > > Sebastien > > > > -----------------------------------------------------------------------= -- > > Take Surveys. Earn Cash. Influence the Future of IT > > Join SourceForge.net's Techsay panel and you'll get the chance to share= your > > opinions on IT & business topics through brief surveys -- and earn cash > > http://www.techsay.com/default.php?page=3Djoin.php&p=3Dsourceforge&CID= =3DDEVDEV > > _______________________________________________ > > Connotea-code-devel mailing list > > Con...@li... > > https://lists.sourceforge.net/lists/listinfo/connotea-code-devel > > *************************************************************************= ******* > DISCLAIMER: This e-mail is confidential and should not be used by anyone = who is > not the original intended recipient. If you have received this e-mail in = error > please inform the sender and delete it from your mailbox or any other sto= rage > mechanism. Neither Macmillan Publishers Limited nor any of its agents acc= ept > liability for any statements made which are clearly the sender's own and = not > expressly made on behalf of Macmillan Publishers Limited or one of its ag= ents. > Please note that neither Macmillan Publishers Limited nor any of its agen= ts > accept any responsibility for viruses that may be contained in this e-mai= l or > its attachments and it is your responsibility to scan the e-mail and > attachments (if any). No contracts may be concluded on behalf of Macmilla= n > Publishers Limited or its agents by means of e-mail communication. Macmil= lan > Publishers Limited Registered in England and Wales with registered number= 785998 > Registered Office Brunel Road, Houndmills, Basingstoke RG21 6XS > *************************************************************************= ******* > > ------------------------------------------------------------------------- > Take Surveys. Earn Cash. Influence the Future of IT > Join SourceForge.net's Techsay panel and you'll get the chance to share y= our > opinions on IT & business topics through brief surveys -- and earn cash > http://www.techsay.com/default.php?page=3Djoin.php&p=3Dsourceforge&CID=3D= DEVDEV > _______________________________________________ > Connotea-code-devel mailing list > Con...@li... > https://lists.sourceforge.net/lists/listinfo/connotea-code-devel > |
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From: Lund, B. <b....@na...> - 2006-08-07 11:33:09
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Hi Sebastien, Thanks for this. I don't suppose you have Perl BibTeX parsing skills, and are willing to help out, do you? We've experimented with the CPAN Text::BibTeX module ( http://search.cpan.org/~ambs/Text-BibTeX-0.36/BibTeX.pm), but it has proved to have problems coping with the variety of BibTeX files that are out there in the wild. We'll test the NASA-ADS BibTeX, and if it seems to parse well, we should be able to create a plug-in fairly quickly. Ta, Ben On 4/8/06 05:50, "S=E9bastien Maret" <seb...@gm...> wrote: > I have just submitted a request on the wiki for a plugin to import > citations in Connotea from NASA-ADS abstract service. >=20 > Here are some hints on how this pluging could be implemented: >=20 > A typical bibliographic entry look like that: > http://adsabs.harvard.edu/cgi-bin/nph-bib_query?bibcode=3D1965ApJ...142..= 419P >=20 >> From the bibcode in the URL, its is possible to retrieve the an XML > file containing all needed entries: > http://adsabs.harvard.edu/cgi-bin/nph-bib_query?bibcode=3D1965ApJ...142..= 419P&am > p;data_type=3DXML >=20 > Alternatively, it is possible to retrieve a BibTeX entry: > http://adsabs.harvard.edu/cgi-bin/nph-bib_query?bibcode=3D1965ApJ...142..= 419P&am > p;data_type=3DBIBTEX >=20 > Sebastien >=20 > ------------------------------------------------------------------------- > Take Surveys. Earn Cash. Influence the Future of IT > Join SourceForge.net's Techsay panel and you'll get the chance to share y= our > opinions on IT & business topics through brief surveys -- and earn cash > http://www.techsay.com/default.php?page=3Djoin.php&p=3Dsourceforge&CID=3D= DEVDEV > _______________________________________________ > Connotea-code-devel mailing list > Con...@li... > https://lists.sourceforge.net/lists/listinfo/connotea-code-devel ***************************************************************************= ***** =20 DISCLAIMER: This e-mail is confidential and should not be used by anyone wh= o is not the original intended recipient. If you have received this e-mail in er= ror please inform the sender and delete it from your mailbox or any other stora= ge mechanism. Neither Macmillan Publishers Limited nor any of its agents accept liability for any statements made which are clearly the sender's own and not expressly made on behalf of Macmillan Publishers Limited or one of its agen= ts. Please note that neither Macmillan Publishers Limited nor any of its agents accept any responsibility for viruses that may be contained in this e-mail = or its attachments and it is your responsibility to scan the e-mail and=20 attachments (if any). No contracts may be concluded on behalf of Macmillan=20 Publishers Limited or its agents by means of e-mail communication. Macmilla= n=20 Publishers Limited Registered in England and Wales with registered number 7= 85998=20 Registered Office Brunel Road, Houndmills, Basingstoke RG21 6XS =20 ***************************************************************************= ***** |
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From: <seb...@gm...> - 2006-08-04 04:50:58
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I have just submitted a request on the wiki for a plugin to import citations in Connotea from NASA-ADS abstract service. Here are some hints on how this pluging could be implemented: A typical bibliographic entry look like that: http://adsabs.harvard.edu/cgi-bin/nph-bib_query?bibcode=1965ApJ...142..419P >From the bibcode in the URL, its is possible to retrieve the an XML file containing all needed entries: http://adsabs.harvard.edu/cgi-bin/nph-bib_query?bibcode=1965ApJ...142..419P&data_type=XML Alternatively, it is possible to retrieve a BibTeX entry: http://adsabs.harvard.edu/cgi-bin/nph-bib_query?bibcode=1965ApJ...142..419P&data_type=BIBTEX Sebastien |
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