error with call

[JP Tsai]

Hello,

I'm running python 2.7, tables 2.3 (i also tried 2.3.1), numpy 1.5.1, numexpr 1.4.2.

When I try running call, I get the errors:

Traceback (most recent call last):
File "conifer.py", line 682, in <module>
args.func(args)
File "conifer.py", line 338, in CF_call
r = cf.rpkm_reader(h5file_in_fn)
File "/conifer_functions.py", line 256, in init
self.sample_table = self.h5file.root.samples.samples
File "/python2.7/site-packages/tables/group.py", line 826, in getattr
return self._f_getChild(name)
File "/lib/python2.7/site-packages/tables/group.py", line 697, in _f_getChild
self._g_checkHasChild(childname)
File "/lib/python2.7/site-packages/tables/group.py", line 436, in _g_checkHasChild
% (self._v_pathname, name))
tables.exceptions.NoSuchNodeError: group / does not have a child named samples</module>

It looks like an error with tables?

[Niklas Krumm]

I don’t think this is an error with the tables installation. What commands did you run before this, and did they complete successfully?

Thanks
Nik

On Mar 30, 2017, at 12:12 PM, JP Tsai jtsaip@users.sf.net wrote:

Hello,

I'm running python 2.7, tables 2.3 (i also tried 2.3.1), numpy 1.5.1, numexpr 1.4.2.

When I try running call, I get the errors:

Traceback (most recent call last):
File "conifer.py", line 682, in <module>
args.func(args)
File "conifer.py", line 338, in CF_call
r = cf.rpkm_reader(h5file_in_fn)
File "/conifer_functions.py", line 256, in init
self.sample_table = self.h5file.root.samples.samples
File "/python2.7/site-packages/tables/group.py", line 826, in getattr
return self._f_getChild(name)
File "/lib/python2.7/site-packages/tables/group.py", line 697, in _f_getChild
self._g_checkHasChild(childname)
File "/lib/python2.7/site-packages/tables/group.py", line 436, in _g_checkHasChild
% (self._v_pathname, name))
tables.exceptions.NoSuchNodeError: group / does not have a child named samples</module>

It looks like an error with tables?

error with call

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