Hi all,
After a long time I used conifer again and now I'm struggling against a simple problem with the probe definition file.
I'm using Illumina baits bed file with standard chromosome names. I've seen conifer, internally, uses another definition as sexual chromosomes are named chr23 (and possiby chr24). RPKM calculation runs fine, analysis too but I can't export data for all samples as the hdf5 file has an empty chr24 group.
Would it be possible to handle chromosome names in their natural form?
Thanks
d
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Hi all,
After a long time I used conifer again and now I'm struggling against a simple problem with the probe definition file.
I'm using Illumina baits bed file with standard chromosome names. I've seen conifer, internally, uses another definition as sexual chromosomes are named chr23 (and possiby chr24). RPKM calculation runs fine, analysis too but I can't export data for all samples as the hdf5 file has an empty chr24 group.
Would it be possible to handle chromosome names in their natural form?
Thanks
d