https://sourceforge.net/p/comfi/wiki/example/Recent changes to exampleenFri, 26 Jul 2013 20:31:30 -0000https://sourceforge.net/p/comfi/wiki/example/<div class="markdown_content"><pre>--- v13 +++ v14 @@ -37,9 +37,7 @@ 5. Select "Remove complex members from source network" 6. Select "Binary-GS.txt" as source and target network 7. Click on the "Search" button - - -See also the [user guide](User%20guide/#find-complexes) +For more information see also the [user guide](User%20guide/#find-complexes)  </pre> </div>habermannlabFri, 26 Jul 2013 20:31:30 -0000https://sourceforge.net1a5954b0f6c62a4046396c5abfbe870c6d6e65d2https://sourceforge.net/p/comfi/wiki/example/<div class="markdown_content"><pre>--- v12 +++ v13 @@ -39,6 +39,9 @@ 7. Click on the "Search" button +See also the [user guide](User%20guide/#find-complexes) + +  @@ -54,4 +57,3 @@ You will also notice the long list of new networks which are in fact the nested networks, that contain each member of the complex.  - </pre> </div>habermannlabFri, 26 Jul 2013 20:30:45 -0000https://sourceforge.net8233beac2f8d283cfc1e0a8972fd0b5ae4cf2dddhttps://sourceforge.net/p/comfi/wiki/example/<div class="markdown_content"><pre>--- v11 +++ v12 @@ -51,6 +51,7 @@ If you compare the before and after situation you will also note that the number of nodes has increased even though the nodes representing single proteins that are contained within a complex have been removed. This is caused by the possibility that proteins from a set can be combined in various manners to form complexes (e.g. A+B , A+C, B+C, A+B+C).You will also notice that the number of edges has increased. This is because every new complex node has all the connections the single proteins had (and maybe even some new connections to other complex nodes). +You will also notice the long list of new networks which are in fact the nested networks, that contain each member of the complex.  </pre> </div>habermannlabFri, 26 Jul 2013 20:29:19 -0000https://sourceforge.net53bbe746ce706f30c2d9d08c90a225240b8ae976https://sourceforge.net/p/comfi/wiki/example/<div class="markdown_content"><pre>--- v10 +++ v11 @@ -42,14 +42,15 @@  -You will see progress bar popping up displaying information on what the software is currently doing. When the protein complex search has finished the result menu will pop up. You can search the results by typing into the search field or sort them by clicking on colums. See also the [user guide](User%20guide/#show-results) +##Show results## +When the protein complex search has finished the result menu will pop up. You can search the results by typing into the search field or sort them by clicking on colums. See also the [user guide](User%20guide/#show-results)  - - - - You can click on "Save all", save the result as a tab separated file and import it into Excel. This is done in Excel via "File"--> "open", setting the file filter to "enable all documents" and then simply selecting and opening it. Afterwards Excel will ask you in a series of dialogues which kind of delimiter this file uses. Just select tab and "Finish". +If you compare the before and after situation you will also note that the number of nodes has increased even though the nodes representing single proteins that are contained within a complex have been removed. This is caused by the possibility that proteins from a set can be combined in various manners to form complexes (e.g. A+B , A+C, B+C, A+B+C).You will also notice that the number of edges has increased. This is because every new complex node has all the connections the single proteins had (and maybe even some new connections to other complex nodes). + + + </pre> </div>habermannlabFri, 26 Jul 2013 20:27:46 -0000https://sourceforge.neteef1f264baa16b957882ebbc6464c4ce83a26596https://sourceforge.net/p/comfi/wiki/example/<div class="markdown_content"><pre>--- v9 +++ v10 @@ -42,7 +42,7 @@  -You will see progress bar popping up displaying information on what the software is currently doing. When the protein complex search has finished the result menu will pop up. You can search the results by typing into the search field or sort them by clicking on colums. See also the user guide [User%20guide/#show-results] +You will see progress bar popping up displaying information on what the software is currently doing. When the protein complex search has finished the result menu will pop up. You can search the results by typing into the search field or sort them by clicking on colums. See also the [user guide](User%20guide/#show-results)  </pre> </div>habermannlabFri, 26 Jul 2013 20:18:22 -0000https://sourceforge.net9803b8f6cfae36b5ace43ffa82e0d2a2e7df2f6chttps://sourceforge.net/p/comfi/wiki/example/<div class="markdown_content"><pre>--- v8 +++ v9 @@ -42,7 +42,7 @@  -You will see progress bar popping up displaying information on what the software is currently doing. When the protein complex search has finished the result menu will pop up. +You will see progress bar popping up displaying information on what the software is currently doing. When the protein complex search has finished the result menu will pop up. You can search the results by typing into the search field or sort them by clicking on colums. See also the user guide [User%20guide/#show-results]  @@ -53,4 +53,3 @@ You can click on "Save all", save the result as a tab separated file and import it into Excel. This is done in Excel via "File"--> "open", setting the file filter to "enable all documents" and then simply selecting and opening it. Afterwards Excel will ask you in a series of dialogues which kind of delimiter this file uses. Just select tab and "Finish". - </pre> </div>habermannlabFri, 26 Jul 2013 20:17:54 -0000https://sourceforge.netdc6358c7f36a3360093af3c79502532e5c4065a4https://sourceforge.net/p/comfi/wiki/example/<div class="markdown_content"><pre></pre> </div>habermannlabFri, 26 Jul 2013 20:15:48 -0000https://sourceforge.net2ed21ea50fd16e787eb1143564d47147b9481b88https://sourceforge.net/p/comfi/wiki/example/<div class="markdown_content"><pre></pre> </div>habermannlabFri, 26 Jul 2013 20:13:26 -0000https://sourceforge.net8aa4a1cc172e8cb74dcd33e7171882854d91e8echttps://sourceforge.net/p/comfi/wiki/example/<div class="markdown_content"><pre></pre> </div>habermannlabFri, 26 Jul 2013 20:10:51 -0000https://sourceforge.net28174a9030fd29019d2e44f53fb349466881b970https://sourceforge.net/p/comfi/wiki/example/<div class="markdown_content"><pre></pre> </div>habermannlabFri, 26 Jul 2013 20:05:00 -0000https://sourceforge.net1001ba741f47c62c51d93e5a7bef358ddf4368ca