COHCAP Discussion

City of Hope CpG Island Analysis Pipeline

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General Discussion

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Topic	Posts	Views	Last Post
Cohcap gui not working in windows 7, 64 bit pc By Anonymous on Sun Feb 11, 2018 08:59 AM	2	221	By Charles Warden on Mon Feb 12, 2018 04:01 AM
Unable to load beta file because 'duplicate 'row.names' are not allowed' By Anonymous on Fri Feb 09, 2018 03:22 AM	4	284	By Charles Warden on Sun Feb 11, 2018 01:48 AM
Difference between COHCAP.avg.by.site and COHCAP.avg.by.island By Anonymous on Thu Dec 21, 2017 04:48 AM	3	136	By Anonymous on Wed Dec 27, 2017 07:49 AM
Trouble getting my data files to work. By Anonymous on Mon Aug 14, 2017 07:21 PM	27	738	By James Askew on Wed Nov 29, 2017 04:05 PM
COHCAP.site yields no differentially methylated sites By Anonymous on Fri Jun 09, 2017 09:54 AM	7	214	By Charles Warden on Thu Jun 15, 2017 11:57 PM
Principal Component Analysis By Anonymous on Fri Mar 24, 2017 01:23 PM	3	135	By Anonymous on Tue Mar 28, 2017 07:36 PM
COHCAP Perl error By Anonymous on Mon Jan 23, 2017 08:08 PM	4	422	By Charles Warden on Tue Jan 24, 2017 08:28 PM
COHCAP for EPIC Data By Anonymous on Wed Jul 20, 2016 04:42 PM	8	439	By Charles Warden on Fri Jul 22, 2016 06:57 PM
Bioconductor " Warning message during CpG Site Analysis" By Anonymous on Wed Feb 19, 2014 02:05 PM	15	2238	By Anonymous on Mon Mar 10, 2014 02:22 PM
Should I change methyl.cutoff to 0.3? By Anonymous on Fri Apr 08, 2016 08:43 AM	2	195	By Charles Warden on Fri Apr 08, 2016 03:42 PM
How to get .idat files for inputting to COHCAP By Anonymous on Mon Dec 14, 2015 02:27 PM	2	300	By Anonymous on Tue Dec 15, 2015 11:37 AM
Is COHCAP suitable to analyze ERRBS methylation data? By Anonymous on Sat Oct 31, 2015 01:53 PM	2	276	By Charles Warden on Sat Oct 31, 2015 01:57 PM
Re: Pearl and R By Anonymous on Sat Feb 01, 2014 06:56 AM	5	570	By ferhat on Mon Oct 05, 2015 05:46 PM
M values in COHCAP? By Anonymous on Sat Apr 11, 2015 08:45 PM	2	256	By Charles Warden on Sat Apr 11, 2015 08:46 PM
COHCAP R package By Anonymous on Wed Mar 05, 2014 09:13 AM	13	774	By Charles Warden on Mon Dec 08, 2014 08:47 PM
p-value and FDR values all 1? By Anonymous on Tue Sep 30, 2014 01:56 PM	15	397	By Charles Warden on Mon Oct 06, 2014 03:09 PM
p-values and FDR values all 1 in CpG_stats spreadsheet By Anonymous on Tue Sep 30, 2014 01:28 PM	2	217	By Charles Warden on Tue Sep 30, 2014 01:49 PM
COHCAP is now available in Bioconductor! By Charles Warden on Wed Jan 22, 2014 12:02 AM	2	251	By Charles Warden on Tue Apr 15, 2014 07:19 PM
New Organization for Discussion Group By Charles Warden on Thu Mar 06, 2014 09:57 PM	1	212	By Charles Warden on Thu Mar 06, 2014 09:57 PM
CpG island? By Anonymous on Thu Feb 27, 2014 08:23 PM	12	768	By Anonymous on Tue Mar 04, 2014 08:39 PM
Gene Expression Integration: Input File Format By Anonymous on Fri Feb 28, 2014 01:24 AM	4	326	By Charles Warden on Fri Feb 28, 2014 01:35 AM
How to Open the .wig files in UCSC brower - output from COHCAP !! By Anonymous on Fri Feb 21, 2014 04:29 AM	4	157	By Anonymous on Fri Feb 21, 2014 07:54 AM
Input data for COHCAP By Anonymous on Wed Feb 19, 2014 05:26 AM	4	297	By Anonymous on Wed Feb 19, 2014 08:26 AM
Re: COHCAP installation in R By Anonymous on Mon Feb 17, 2014 08:35 AM	2	269	By Anonymous on Mon Feb 17, 2014 08:35 AM
Can't seem to get the program working error By Anonymous on Thu Oct 24, 2013 11:31 PM	10	463	By Charles Warden on Thu Dec 05, 2013 04:45 PM

1 2 > >> (Page 1 of 2)

COHCAP Discussion

City of Hope CpG Island Analysis Pipeline

Forums

Help

General Discussion

Cohcap gui not working in windows 7, 64 bit pc

Unable to load beta file because 'duplicate 'row.names' are not allowed'

Difference between COHCAP.avg.by.site and COHCAP.avg.by.island

Trouble getting my data files to work.

COHCAP.site yields no differentially methylated sites

Principal Component Analysis

COHCAP Perl error

COHCAP for EPIC Data

Bioconductor " Warning message during CpG Site Analysis"

Should I change methyl.cutoff to 0.3?

How to get .idat files for inputting to COHCAP

Is COHCAP suitable to analyze ERRBS methylation data?

Re: Pearl and R

M values in COHCAP?

COHCAP R package

p-value and FDR values all 1?

p-values and FDR values all 1 in CpG_stats spreadsheet

COHCAP is now available in Bioconductor!

New Organization for Discussion Group

CpG island?

Gene Expression Integration: Input File Format

How to Open the .wig files in UCSC brower - output from COHCAP !!

Input data for COHCAP

Re: COHCAP installation in R

Can't seem to get the program working error

COHCAP Discussion

City of Hope CpG Island Analysis Pipeline

Forums

Help

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General Discussion