COHCAP Discussion

City of Hope CpG Island Analysis Pipeline

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Bioconductor Issues

Issues with running the Bioconductor version of COHCAP

Topic	Posts	Views	Last Post
COHCAP for TCGA data By Anonymous on Wed Apr 01, 2015 07:33 PM	11	766	By Charles Warden on Tue Jun 13, 2023 12:34 AM
Problem with "COHCAP.integrate.avg.by.island" By Anonymous on Mon Apr 30, 2018 09:50 AM	3	290	By Anonymous on Wed May 02, 2018 08:51 AM
COHCAP By Anonymous on Mon Oct 09, 2017 08:32 AM	2	219	By Charles Warden on Tue Oct 10, 2017 02:04 AM
Integration with Gene Expression (Average by Island) By Anonymous on Thu Feb 12, 2015 11:47 PM	10	648	By Anonymous on Sun Mar 19, 2017 08:04 PM
Problem annotating using COHCAP 1.16.0 in MacOsX By Anonymous on Thu Dec 29, 2016 05:56 PM	5	286	By Anonymous on Wed Jan 04, 2017 09:43 AM
Analysis of one-group comparison By Anonymous on Tue Jul 19, 2016 06:43 PM	2	197	By Charles Warden on Tue Jul 19, 2016 08:51 PM
Input data from FinalReport generated by illumina By Anonymous on Fri May 22, 2015 04:01 PM	2	307	By Anonymous on Mon Sep 28, 2015 10:49 AM
DMR's annotation By Anonymous on Tue Mar 25, 2014 06:52 PM	3	851	By Charles Warden on Wed Mar 26, 2014 04:44 PM
Parameter setting for COHCAP By Anonymous on Thu Feb 19, 2015 02:00 PM	6	333	By Anonymous on Wed Apr 01, 2015 03:41 PM
COHCAP.integrate.avg.by.site doesn't work properly By Anonymous on Wed Mar 11, 2015 01:28 PM	2	282	By Charles Warden on Sun Mar 22, 2015 09:39 PM
Parameter problem By Anonymous on Mon Mar 24, 2014 08:31 PM	10	409	By Charles Warden on Tue Mar 25, 2014 11:58 PM
How to integrate Expression data in COHCAP in R/Bioconductr By Anonymous on Mon Mar 17, 2014 10:39 PM	2	277	By Charles Warden on Tue Mar 18, 2014 12:20 AM
Why I am not getting differential methylated CpG island By Anonymous on Tue Mar 11, 2014 09:39 PM	4	371	By Charles Warden on Wed Mar 12, 2014 12:43 AM
COHCAP for latest version of R (R 3.0.2/3.0.3) By Anonymous on Tue Mar 11, 2014 10:05 PM	2	193	By Charles Warden on Tue Mar 11, 2014 10:06 PM
Perl script 'WriteXLSX.pl' failed to run successfully. By Anonymous on Tue Mar 11, 2014 04:36 PM	3	3808	By Charles Warden on Tue Mar 11, 2014 04:45 PM