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coefficient-users
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From: Thomas F. <tfo...@us...> - 2005-01-25 10:53:00
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On Tue, 2005-01-25 at 10:16 +0100, > Could you please help me or indicate me who I could contact in order > to get some help. The best place to ask for help is on the coefficient users list (CC'ed) See: http://sourceforge.net/mail/?group_id=90755 > I have recently seen an article on theserverside on the Coefficient. > There are quite a lot of bad comments on the project however I think > that the issue tracking concept is not reserved to Jira. Nevermind. Cool. Note that the issue tracker was totally redone, so there can no longer be any cause for complaint :) > I wanted to see how Coefficient looks like but I have some troubles > installing it in Tomcat. > I have attached a screenshot of the exception. Could you please help > me ? It looks like coefficient is unable to connect to the database. Please check your connection settings, and that you have the correct jars in tomcat's lib directory. You should also check the log file (probably catalina.out) for a clue as to what is causing the problem. There should be a stack trace in there somewhere. Cheers T -- This message has been scanned for viruses and dangerous content by MailScanner, and is believed to be clean. MailScanner thanks transtec Computers for their support. |
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From: <seb...@ph...> - 2005-01-25 13:38:05
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From: Thomas F. <tfo...@us...> - 2005-01-25 15:29:46
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On Tue, 2005-01-25 at 14:37 +0100, sebastien wrote: > Actually it seems that the connection to the database is working > because some tables have been automatically > created. Also in the catalina logs I can see that tables have been > found. Sorry, I didn't read your stacktrace properly :) Are there any other exceptions logged in the log files? Could you also check that coefficient correctly inserted the default data (i.e. see what data you have in tables coefficient_role, coefficient_user, etc). See: src/za/org/coefficient/util/ejb/DataLoaderUtil.java (which is used by the HibernateUtil to load the default data) It looks like usersHighestRole is null in Configuration.canExecuteForRole(...) This should not be null, because it is set to SecurityUtil.getRoleForDescription(GUEST_ROLE_DESC) which can only be null if: - the default data wasn't properly loaded, or - the data could not be read from the db (unlikely) In either case, an exception should be logged (although, in the first case, this would have been at db init/creation time, and possibly overwritten in the logs). If the problem is that default data is missing, you could try dropping the database and restarting tomcat, so that hibernate will recreate the tables (and reload the data). Cheers T -- This message has been scanned for viruses and dangerous content by MailScanner, and is believed to be clean. MailScanner thanks transtec Computers for their support. |
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From: <seb...@ph...> - 2005-01-25 15:50:33
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From: Thomas F. <tfo...@us...> - 2005-01-26 10:02:54
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On Tue, 2005-01-25 at 16:50 +0100, sebastien wrote: > I looked in the coefficient_role table and as you mentionned it was > empty. > I did drop and recreate the database. Then I restarted the server and > tried to access the coefficient homepage. > > See attached the whole catalina logs after a tomcat restart. We can > see inside that the tables have not been found. > Consequently tables have been recreated however they are still empty. > > There is obviouly a problem in inserting the original data. <log-extract> java.lang.Throwable at com.mysql.jdbc.Connection.close(Connection.java:1123) at net.sf.hibernate.util.HibernateUtil.updateSchema(HibernateUtil.java:818) </log-extract> This happens when we try to close the connection after creating the db; it is a non-critical exception, and is thus just swallowed. It seems, though, that the mysql driver throws a plain Throwable here. We only check for Exception instances (Exception extends Throwable), so this Throwable is never caught (hence propagating right up the call stack). As a result, the default data is never loaded. I've uploaded a patched hibernateUtil.jar for testing here: http://icomdmz1.csir.co.za/~tfogwill/files/hibernateUtil.jar Please drop the db and try again with this jar (instead of the one that ships with coefficient). You will probably see messages like this in the log file: Non critical exception. Will be swallowed. Exception message: ... Non critical exception (throwable). Will be swallowed. Exception message: ... Let me know whether this works for you. If it does, I'll update the sourceforge release files to include this version (after removing the debug code). -- This message has been scanned for viruses and dangerous content by MailScanner, and is believed to be clean. MailScanner thanks transtec Computers for their support. |
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From: Thomas F. <tfo...@us...> - 2005-01-27 15:01:30
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On Thu, 2005-01-27 at 12:23 +0100, seb...@ph... wrote: > Building the jar with JDK 1.4.2 has solved the version issue. > However the original problem is not solved. I tried with mysql on my machine, and it seems to work ok (well, mostly ok, except that the workflow user isn't added, due to not-null constraints; that's not critical, though). On my box: mysql-server --> version 4.1.9-1 libmysql-java (jdbc driver) --> version 3.0.9-1 tomcat4 --> version 4.1.31-2 So, not exactly the same version as you, but close enough, I'd think. I will, however, try with the mysql-connector-java-3.0.16-ga-bin.jar driver. My guess is that this is where the problem lies. I've spent some time looking at what could have gone wrong. I think I see what's happening, but I cannot figure out why it's happening. Here's what seems to be going on... this is where it starts to look interesting: > ... > > net.sf.hibernate.exception.GenericJDBCException: Could not execute query > at net.sf.hibernate.exception.ErrorCodeConverter.handledNonSpecificException(ErrorCodeConverter.java:90) > at net.sf.hibernate.exception.ErrorCodeConverter.convert(ErrorCodeConverter.java:79) > at net.sf.hibernate.exception.JDBCExceptionHelper.convert(JDBCExceptionHelper.java:30) > at net.sf.hibernate.impl.SessionImpl.convert(SessionImpl.java:4110) > at net.sf.hibernate.impl.SessionImpl.find(SessionImpl.java:1556) > at net.sf.hibernate.impl.SessionImpl.find(SessionImpl.java:1530) > at net.sf.hibernate.impl.SessionImpl.find(SessionImpl.java:1522) > at net.sf.hibernate.util.HibernateUtil.find(HibernateUtil.java:354) > at za.org.coefficient.util.common.Roles.getAllRoles(Roles.java:49) > at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) > at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) > at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) > at java.lang.reflect.Method.invoke(Method.java:324) > at org.apache.commons.beanutils.MethodUtils.invokeMethod(MethodUtils.java:252) > at org.apache.commons.beanutils.MethodUtils.invokeMethod(MethodUtils.java:198) > at za.org.coefficient.invokers.base.BaseInvoker.invokeMethodOnService(BaseInvoker.java:138) > at za.org.coefficient.util.ejb.DataLoaderUtil.createDefaultRolesIfNeeded(DataLoaderUtil.java:163) > ... > Caused by: java.sql.SQLException: No operations allowed after connection closed. This occurs when the dataloader tries to load the default roles. It first does a a "find" on the existing roles (the call to HibernateUtil.find above). This call, however, fails (because the connection was previously closed; it seems that the mysql driver "remembers" that you closed the connection, probably by creating a new Throwable() and holding a reference to it internally). The "find" call failing results in the roles list being null, hence the NPE here: > java.lang.NullPointerException > at za.org.coefficient.util.ejb.DataLoaderUtil.createDefaultRolesIfNeeded(DataLoaderUtil.java:165) > at za.org.coefficient.util.ejb.DataLoaderUtil.initializeDataIfNeeded(DataLoaderUtil.java:140) Then, because the roles don't exist, we cannot add the default users (due to not-null constraints): > 10616 [Thread-5] INFO ejb.DataLoaderUtil - at: DataLoaderUtil.java:266 | operation: user registration | username: admin | fullname: Site Administrato > r > 10626 [Thread-5] INFO ejb.DataLoaderUtil - at: DataLoaderUtil.java:266 | operation: save | on: za.org.coefficient.authentication.CoefficientUser | to > String: Site Administrator > 10636 [Thread-5] ERROR ejb.DataLoaderUtil - at: DataLoaderUtil.java:266 | operation: persistence exception on update | exception type: net.sf.hiberna > te.PropertyValueException | exception message: not-null property references a null or transient value: za.org.coefficient.authentication.CoefficientUs > er.systemRole > net.sf.hibernate.PropertyValueException: not-null property references a null or transient value: za.org.coefficient.authentication.CoefficientUser.sys > temRole > at net.sf.hibernate.impl.SessionImpl.checkNullability(SessionImpl.java:1286) > at net.sf.hibernate.impl.SessionImpl.doSave(SessionImpl.java:937) However, all the other data seems to load fine: (this I find odd. why would the roles operations fail, but these work ok?) > 10676 [Thread-5] INFO ejb.DataLoaderUtil - at: DataLoaderUtil.java:299 | operation: save | on: za.org.coefficient.core.ProjectAttribute | toString: z > a.org.coefficient.core.ProjectAttribute@118abfe > 10756 [Thread-5] INFO ejb.DataLoaderUtil - at: DataLoaderUtil.java:308 | operation: save | on: za.org.coefficient.core.ProjectAttributeData | toStrin > g: za.org.coefficient.core.ProjectAttributeData@94b318 > 10756 [Thread-5] INFO ejb.DataLoaderUtil - at: DataLoaderUtil.java:308 | operation: save | on: za.org.coefficient.core.ProjectAttributeData | toStrin > g: za.org.coefficient.core.ProjectAttributeData@f84b0a > 10756 [Thread-5] INFO ejb.DataLoaderUtil - at: DataLoaderUtil.java:308 | operation: save | on: za.org.coefficient.core.ProjectAttributeData | toStrin > g: za.org.coefficient.core.ProjectAttributeData@106b56a > 10766 [Thread-5] INFO ejb.DataLoaderUtil - at: DataLoaderUtil.java:308 | operation: save | on: za.org.coefficient.core.ProjectAttributeData | toStrin > g: za.org.coefficient.core.ProjectAttributeData@1705316 > 10766 [Thread-5] INFO ejb.DataLoaderUtil - at: DataLoaderUtil.java:308 | operation: save | on: za.org.coefficient.core.ProjectAttributeData | toStrin > ... And here, when the system tries to run the default configuration screen, we fail because there are no users/roles: > java.lang.NullPointerException > at za.org.coefficient.modules.configuration.Configuration.canExecuteForRole(Configuration.java:68) > at za.org.coefficient.invokers.base.BaseInvoker.invokeOpOnModule(BaseInvoker.java:177) > at za.org.coefficient.interceptors.ConfigurationInterceptor.handleInvoke(ConfigurationInterceptor.java:45) > at za.org.coefficient.core.CoefficientInterceptor.invoke(CoefficientInterceptor.java:79) > at za.org.coefficient.core.CoefficientInterceptor.invoke_aroundBody0(CoefficientInterceptor.java:90) > ... > As I mentioned, I'll test with the 3.0.16 driver as well, and get back to you. -- This message has been scanned for viruses and dangerous content by MailScanner, and is believed to be clean. MailScanner thanks transtec Computers for their support. |
|
From: Thomas F. <tfo...@us...> - 2005-01-27 15:26:42
|
On Thu, 2005-01-27 at 17:00 +0200, Thomas Fogwill wrote: > So, not exactly the same version as you, but close enough, I'd think. I > will, however, try with the mysql-connector-java-3.0.16-ga-bin.jar > driver. My guess is that this is where the problem lies. mmm... still couldn't replicate your problem (I tried with 3.0.16). Anyway, let's try something else. I've created a new hibernateUtil.jar here: http://icomdmz1.csir.co.za/~tfogwill/files/hibernateUtil.jar In this one, I commented out line 816; that's the line where the connection is explicitly closed. i.e. 815: if (conn != null) { 816: //conn.close(); 817: } This is not necessarily a good idea. I don't know why he did it, but I'm sure Dylan had a good reason for explicitly closing the connection here. Nonetheless, let's try it like this for now, to see if it solves the problem for you. Failing that, I could always give you a sql dump of my initialised database. That should get you up and running, as the whole db init process won't need to happen. I'd prefer actually solving the problem, though; and for that to happen, it's better to have it breaking on your system (as I can't replicate your problem on mine). > it seems that the mysql driver "remembers" that you closed the > connection, probably by creating a new Throwable() and holding a > reference to it internally). Indeed, it does exactly that. On line 1123 of Connection.java, in method close(), this is done to remember when and where the connection was explicitly closed: this.explicitCloseLocation = new Throwable(); this.explicitCloseLocation is then obviously thrown later. -- This message has been scanned for viruses and dangerous content by MailScanner, and is believed to be clean. MailScanner thanks transtec Computers for their support. |
|
From: <seb...@ph...> - 2005-01-27 15:21:51
|
Thomas,
Which driver are you using ?
I don't think it is related to the version itself but more to the driver.
I use the org.gjt.mm.mysql.Driver
thanks,
seb
Thomas Fogwill <tfo...@us...>
27/01/2005 16:00
Please respond to tfogwill
To: Sebastien Lemeunier/PH/Novartis@PH
cc: coefficient-users <coe...@li...>
Subject: Re: Coefficient
Category:
On Thu, 2005-01-27 at 12:23 +0100,
seb...@ph... wrote:
> Building the jar with JDK 1.4.2 has solved the version issue.
> However the original problem is not solved.
I tried with mysql on my machine, and it seems to work ok (well, mostly
ok, except that the workflow user isn't added, due to not-null
constraints; that's not critical, though).
On my box:
mysql-server --> version 4.1.9-1
libmysql-java (jdbc driver) --> version 3.0.9-1
tomcat4 --> version 4.1.31-2
So, not exactly the same version as you, but close enough, I'd think. I
will, however, try with the mysql-connector-java-3.0.16-ga-bin.jar
driver. My guess is that this is where the problem lies.
I've spent some time looking at what could have gone wrong. I think I
see what's happening, but I cannot figure out why it's happening.
Here's what seems to be going on...
this is where it starts to look interesting:
> ...
>
> net.sf.hibernate.exception.GenericJDBCException: Could not execute query
> at
net.sf.hibernate.exception.ErrorCodeConverter.handledNonSpecificException(ErrorCodeConverter.java:90)
> at
net.sf.hibernate.exception.ErrorCodeConverter.convert(ErrorCodeConverter.java:79)
> at
net.sf.hibernate.exception.JDBCExceptionHelper.convert(JDBCExceptionHelper.java:30)
> at
net.sf.hibernate.impl.SessionImpl.convert(SessionImpl.java:4110)
> at net.sf.hibernate.impl.SessionImpl.find(SessionImpl.java:1556)
> at net.sf.hibernate.impl.SessionImpl.find(SessionImpl.java:1530)
> at net.sf.hibernate.impl.SessionImpl.find(SessionImpl.java:1522)
> at
net.sf.hibernate.util.HibernateUtil.find(HibernateUtil.java:354)
> at
za.org.coefficient.util.common.Roles.getAllRoles(Roles.java:49)
> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
> at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
> at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
> at java.lang.reflect.Method.invoke(Method.java:324)
> at
org.apache.commons.beanutils.MethodUtils.invokeMethod(MethodUtils.java:252)
> at
org.apache.commons.beanutils.MethodUtils.invokeMethod(MethodUtils.java:198)
> at
za.org.coefficient.invokers.base.BaseInvoker.invokeMethodOnService(BaseInvoker.java:138)
> at
za.org.coefficient.util.ejb.DataLoaderUtil.createDefaultRolesIfNeeded(DataLoaderUtil.java:163)
> ...
> Caused by: java.sql.SQLException: No operations allowed after connection
closed.
This occurs when the dataloader tries to load the default roles. It
first does a a "find" on the existing roles (the call to
HibernateUtil.find above).
This call, however, fails (because the connection was previously closed;
it seems that the mysql driver "remembers" that you closed the
connection, probably by creating a new Throwable() and holding a
reference to it internally).
The "find" call failing results in the roles list being null, hence the
NPE here:
> java.lang.NullPointerException
> at
za.org.coefficient.util.ejb.DataLoaderUtil.createDefaultRolesIfNeeded(DataLoaderUtil.java:165)
> at
za.org.coefficient.util.ejb.DataLoaderUtil.initializeDataIfNeeded(DataLoaderUtil.java:140)
Then, because the roles don't exist, we cannot add the default users (due
to not-null constraints):
> 10616 [Thread-5] INFO ejb.DataLoaderUtil - at: DataLoaderUtil.java:266
| operation: user registration | username: admin | fullname: Site
Administrato
> r
> 10626 [Thread-5] INFO ejb.DataLoaderUtil - at: DataLoaderUtil.java:266
| operation: save | on: za.org.coefficient.authentication.CoefficientUser
| to
> String: Site Administrator
> 10636 [Thread-5] ERROR ejb.DataLoaderUtil - at: DataLoaderUtil.java:266
| operation: persistence exception on update | exception type:
net.sf.hiberna
> te.PropertyValueException | exception message: not-null property
references a null or transient value:
za.org.coefficient.authentication.CoefficientUs
> er.systemRole
> net.sf.hibernate.PropertyValueException: not-null property references a
null or transient value:
za.org.coefficient.authentication.CoefficientUser.sys
> temRole
> at
net.sf.hibernate.impl.SessionImpl.checkNullability(SessionImpl.java:1286)
> at
net.sf.hibernate.impl.SessionImpl.doSave(SessionImpl.java:937)
However, all the other data seems to load fine:
(this I find odd. why would the roles operations fail, but these work ok?)
> 10676 [Thread-5] INFO ejb.DataLoaderUtil - at: DataLoaderUtil.java:299
| operation: save | on: za.org.coefficient.core.ProjectAttribute |
toString: z
> a.org.coefficient.core.ProjectAttribute@118abfe
> 10756 [Thread-5] INFO ejb.DataLoaderUtil - at: DataLoaderUtil.java:308
| operation: save | on: za.org.coefficient.core.ProjectAttributeData |
toStrin
> g: za.org.coefficient.core.ProjectAttributeData@94b318
> 10756 [Thread-5] INFO ejb.DataLoaderUtil - at: DataLoaderUtil.java:308
| operation: save | on: za.org.coefficient.core.ProjectAttributeData |
toStrin
> g: za.org.coefficient.core.ProjectAttributeData@f84b0a
> 10756 [Thread-5] INFO ejb.DataLoaderUtil - at: DataLoaderUtil.java:308
| operation: save | on: za.org.coefficient.core.ProjectAttributeData |
toStrin
> g: za.org.coefficient.core.ProjectAttributeData@106b56a
> 10766 [Thread-5] INFO ejb.DataLoaderUtil - at: DataLoaderUtil.java:308
| operation: save | on: za.org.coefficient.core.ProjectAttributeData |
toStrin
> g: za.org.coefficient.core.ProjectAttributeData@1705316
> 10766 [Thread-5] INFO ejb.DataLoaderUtil - at: DataLoaderUtil.java:308
| operation: save | on: za.org.coefficient.core.ProjectAttributeData |
toStrin
> ...
And here, when the system tries to run the default configuration screen,
we fail because there are no users/roles:
> java.lang.NullPointerException
> at
za.org.coefficient.modules.configuration.Configuration.canExecuteForRole(Configuration.java:68)
> at
za.org.coefficient.invokers.base.BaseInvoker.invokeOpOnModule(BaseInvoker.java:177)
> at
za.org.coefficient.interceptors.ConfigurationInterceptor.handleInvoke(ConfigurationInterceptor.java:45)
> at
za.org.coefficient.core.CoefficientInterceptor.invoke(CoefficientInterceptor.java:79)
> at
za.org.coefficient.core.CoefficientInterceptor.invoke_aroundBody0(CoefficientInterceptor.java:90)
> ...
>
As I mentioned, I'll test with the 3.0.16 driver as well, and get back
to you.
--
This message has been scanned for viruses and
dangerous content by MailScanner, and is
believed to be clean.
MailScanner thanks transtec Computers for their support.
|
|
From: Thomas F. <tfo...@us...> - 2005-01-27 15:35:56
|
On Thu, 2005-01-27 at 16:21 +0100, sebastien wrote: > Which driver are you using ? > I don't think it is related to the version itself but more to the > driver. > > I use the org.gjt.mm.mysql.Driver I have tried with both org.gjt.mm.mysql.Driver and com.mysql.jdbc.Driver Both work for me. -- This message has been scanned for viruses and dangerous content by MailScanner, and is believed to be clean. MailScanner thanks transtec Computers for their support. |
|
From: Thomas F. <tfo...@us...> - 2005-01-27 22:29:14
Attachments:
coefficient.sql.gz
DataLoaderUtil.class
|
On Thu, 2005-01-27 at 16:51 +0100, sebastien wrote: > It makes no difference. I still get the problem. > I also tried to upgrade the mysql-lib to same version than you without > success. I'll be honest, I'm baffled! What's probably happening is that the connection is still being closed when the hibernate session gets closed, and that this is freaking out the dataloader. I'd like to try something else: attached is a patched DataLoader class file. This one checks whether the roles list is null before trying to load the data. This prevents the NullPointerException, and hopefully will allow the data loading process to continue. Please test it by replacing the class file you currently have (i.e. za.org.coefficient.util.ejb.DataLoader). Although I'd still like to get to the bottom of the problem and find a solution, I (for the meanwhile) attach a dump of my database (newly created by coefficient). If the abovementioned patch still doesn't work, the dump should allow you to get the system running, so that you can at least look at it (while we try to figure out how to fix your problem). > INFO: Jk running ID=0 time=0/30 config=C:\Program Files\Apache Group > \Tomcat 4.1\bin\..\conf\jk2.properties I guess this means you're running Windows. Wonder whether there is anything MySQL does differently on Windows, that could be causing the problem? I'm currently on study leave, but once I'm back at the office, I'll give it a shot on Windows box, to see whether it also happens there. Let me know how this goes. Cheers T -- This message has been scanned for viruses and dangerous content by MailScanner, and is believed to be clean. MailScanner thanks transtec Computers for their support. |
|
From: <seb...@ph...> - 2005-01-28 08:41:10
|
The patch you sent me allow the loading to continue. I now only have one
exception left and I get the first
configuration page in my browser.
Windows is not the problem because I installed a version on Solaris which
had exactly the same issue.
Thanks.
ps : I will be on holiday next week but I will be happy to help you
correcting this issue when I am back.
3455 [Thread-5] INFO hbm2ddl.DatabaseMetadata - table not found:
COEFFICIENT_PROJECT
11817 [Thread-5] WARN util.JDBCExceptionReporter - SQL Error: 0,
SQLState: 08003
11817 [Thread-5] ERROR util.JDBCExceptionReporter - No operations allowed
after connection closed.
11827 [Thread-5] WARN util.JDBCExceptionReporter - SQL Error: 0,
SQLState: 08003
11827 [Thread-5] ERROR util.JDBCExceptionReporter - No operations allowed
after connection closed.
net.sf.hibernate.exception.GenericJDBCException: Could not execute query
at
net.sf.hibernate.exception.ErrorCodeConverter.handledNonSpecificException(ErrorCodeConverter.java:90)
at
net.sf.hibernate.exception.ErrorCodeConverter.convert(ErrorCodeConverter.java:79)
at
net.sf.hibernate.exception.JDBCExceptionHelper.convert(JDBCExceptionHelper.java:30)
at
net.sf.hibernate.impl.SessionImpl.convert(SessionImpl.java:4110)
at net.sf.hibernate.impl.SessionImpl.find(SessionImpl.java:1556)
at net.sf.hibernate.impl.SessionImpl.find(SessionImpl.java:1530)
at net.sf.hibernate.impl.SessionImpl.find(SessionImpl.java:1522)
at
net.sf.hibernate.util.HibernateUtil.find(HibernateUtil.java:354)
at za.org.coefficient.util.common.Roles.getAllRoles(Roles.java:49)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:324)
at
org.apache.commons.beanutils.MethodUtils.invokeMethod(MethodUtils.java:252)
at
org.apache.commons.beanutils.MethodUtils.invokeMethod(MethodUtils.java:198)
at
za.org.coefficient.invokers.base.BaseInvoker.invokeMethodOnService(BaseInvoker.java:138)
at
za.org.coefficient.util.ejb.DataLoaderUtil.createDefaultRolesIfNeeded(DataLoaderUtil.java:162)
at
za.org.coefficient.util.ejb.DataLoaderUtil.initializeDataIfNeeded(DataLoaderUtil.java:140)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:324)
at
net.sf.hibernate.util.HibernateUtil.invokeDataLoader(HibernateUtil.java:908)
at
net.sf.hibernate.util.HibernateUtil.<clinit>(HibernateUtil.java:103)
at
za.org.coefficient.modules.configuration.Configuration.getConfiguration(Configuration.java:138)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:324)
at
org.apache.commons.beanutils.MethodUtils.invokeMethod(MethodUtils.java:252)
at
org.apache.commons.beanutils.MethodUtils.invokeMethod(MethodUtils.java:198)
at
za.org.coefficient.invokers.base.BaseInvoker.invokeMethodOnModule(BaseInvoker.java:114)
at
za.org.coefficient.core.BaseConfigurationBackedConstants.init(BaseConfigurationBackedConstants.java:45)
at za.org.coefficient.core.Constants.init(Constants.java:59)
at za.org.coefficient.core.Constants.<clinit>(Constants.java:55)
at
za.org.coefficient.core.CoefficientWebContext.<init>(CoefficientWebContext.java:110)
at
za.org.coefficient.servlet.CoefficientServlet.execute(CoefficientServlet.java:151)
at
za.org.coefficient.servlet.CoefficientServlet.doGet(CoefficientServlet.java:118)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:740)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:853)
at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:247)
at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:193)
at
org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:256)
at
org.apache.catalina.core.StandardPipeline$StandardPipelineValveContext.invokeNext(StandardPipeline.java:643)
at
org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:480)
at
org.apache.catalina.core.ContainerBase.invoke(ContainerBase.java:995)
at
org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:191)
at
org.apache.catalina.core.StandardPipeline$StandardPipelineValveContext.invokeNext(StandardPipeline.java:643)
at
org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:480)
at
org.apache.catalina.core.ContainerBase.invoke(ContainerBase.java:995)
at
org.apache.catalina.core.StandardContext.invoke(StandardContext.java:2415)
at
org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:180)
at
org.apache.catalina.core.StandardPipeline$StandardPipelineValveContext.invokeNext(StandardPipeline.java:643)
at
org.apache.catalina.valves.ErrorDispatcherValve.invoke(ErrorDispatcherValve.java:171)
at
org.apache.catalina.core.StandardPipeline$StandardPipelineValveContext.invokeNext(StandardPipeline.java:641)
at
org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:172)
at
org.apache.catalina.core.StandardPipeline$StandardPipelineValveContext.invokeNext(StandardPipeline.java:641)
at
org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:480)
at
org.apache.catalina.core.ContainerBase.invoke(ContainerBase.java:995)
at
org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:174)
at
org.apache.catalina.core.StandardPipeline$StandardPipelineValveContext.invokeNext(StandardPipeline.java:643)
at
org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:480)
at
org.apache.catalina.core.ContainerBase.invoke(ContainerBase.java:995)
at
org.apache.coyote.tomcat4.CoyoteAdapter.service(CoyoteAdapter.java:223)
at
org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:594)
at
org.apache.coyote.http11.Http11Protocol$Http11ConnectionHandler.processConnection(Http11Protocol.java:392)
at
org.apache.tomcat.util.net.TcpWorkerThread.runIt(PoolTcpEndpoint.java:565)
at
org.apache.tomcat.util.threads.ThreadPool$ControlRunnable.run(ThreadPool.java:619)
at java.lang.Thread.run(Thread.java:536)
Caused by: java.sql.SQLException: No operations allowed after connection
closed.
at com.mysql.jdbc.Connection.checkClosed(Connection.java:2647)
at
com.mysql.jdbc.Connection.prepareStatement(Connection.java:1300)
at
com.mysql.jdbc.Connection.prepareStatement(Connection.java:1281)
at
net.sf.hibernate.impl.BatcherImpl.getPreparedStatement(BatcherImpl.java:260)
at
net.sf.hibernate.impl.BatcherImpl.getPreparedStatement(BatcherImpl.java:235)
at
net.sf.hibernate.impl.BatcherImpl.prepareQueryStatement(BatcherImpl.java:66)
at
net.sf.hibernate.loader.Loader.prepareQueryStatement(Loader.java:783)
at net.sf.hibernate.loader.Loader.doQuery(Loader.java:269)
at
net.sf.hibernate.loader.Loader.doQueryAndInitializeNonLazyCollections(Loader.java:137)
at net.sf.hibernate.loader.Loader.doList(Loader.java:1062)
at net.sf.hibernate.loader.Loader.list(Loader.java:1053)
at
net.sf.hibernate.hql.QueryTranslator.list(QueryTranslator.java:854)
at net.sf.hibernate.impl.SessionImpl.find(SessionImpl.java:1553)
... 64 more
12328 [Thread-5] INFO configuration.Configuration - at:
Configuration.java:147 | operation: save | on:
za.org.coefficient.core.CoefficientConfigurati
on | toString: za.org.coefficient.core.CoefficientConfiguration@167acf2
12348 [Thread-5] INFO configuration.Configuration - at:
Configuration.java:154 | operation: update | on:
za.org.coefficient.core.CoefficientConfigura
tion | object id: 1 | toString:
za.org.coefficient.core.CoefficientConfiguration@167acf2
12909 [Finalizer] WARN impl.SessionImpl - finalizing unclosed session
with closed connection
Thomas Fogwill <tfo...@us...>
27/01/2005 23:27
Please respond to tfogwill
To: Sebastien Lemeunier/PH/Novartis@PH
cc: coefficient-users <coe...@li...>
Subject: Re: Coefficient
Category:
On Thu, 2005-01-27 at 16:51 +0100, sebastien wrote:
> It makes no difference. I still get the problem.
> I also tried to upgrade the mysql-lib to same version than you without
> success.
I'll be honest, I'm baffled! What's probably happening is that the
connection is still being closed when the hibernate session gets closed,
and that this is freaking out the dataloader.
I'd like to try something else: attached is a patched DataLoader class
file. This one checks whether the roles list is null before trying to
load the data. This prevents the NullPointerException, and hopefully
will allow the data loading process to continue. Please test it by
replacing the class file you currently have (i.e.
za.org.coefficient.util.ejb.DataLoader).
Although I'd still like to get to the bottom of the problem and find a
solution, I (for the meanwhile) attach a dump of my database (newly
created by coefficient). If the abovementioned patch still doesn't work,
the dump should allow you to get the system running, so that you can at
least look at it (while we try to figure out how to fix your problem).
> INFO: Jk running ID=0 time=0/30 config=C:\Program Files\Apache Group
> \Tomcat 4.1\bin\..\conf\jk2.properties
I guess this means you're running Windows. Wonder whether there is
anything MySQL does differently on Windows, that could be causing the
problem?
I'm currently on study leave, but once I'm back at the office, I'll give
it a shot on Windows box, to see whether it also happens there.
Let me know how this goes.
Cheers
T
--
This message has been scanned for viruses and
dangerous content by MailScanner, and is
believed to be clean.
MailScanner thanks transtec Computers for their support.
|
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