CNV Workshop

CNV Workshop is a web-enabled platform for analyzing genome variation such as copy number variation (CNV). Learn about CNV Workshop in our associated BMC Bioinformatics manuscript: http://www.biomedcentral.com/1471-2105/11/74

Features

Compute CNV calls using a high-quality published algorithm, on or off a cluster
Publish/view CNV calls via a sophisticated web application
Visualize your CNVs in GBrowse and UCSC genome browser
Support multiple labs/groups via user and group membership
Download in XLS, CSV, XML, BED, and PDF format
View GAD phenotype, DGV CNV, and gene annotation
Compare your CNVs against the CHOP normals data set (healthy controls)
View hyperdiploidy/LOH reports
Link out to FABLE, Entrez, Entrez Gene, GAD, DGV, UCSC

Project Activity

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License

Affero GNU Public License

Follow CNV Workshop

CNV Workshop Web Site

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tfileme Posted 2013-05-22

Cnv works fine.

1 user found this review helpful.

Additional Project Details

Operating Systems

BSD, Linux, Windows

Intended Audience

Advanced End Users, Developers, Healthcare Industry, Information Technology, Science/Research

User Interface

Web-based

Programming Language

Java, Perl, S/R

Database Environment

JDBC, MySQL, Perl DBI/DBD

Related Categories

Perl Bio-Informatics Software, Java Bio-Informatics Software, S/R Bio-Informatics Software

Registered

2009-06-22

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