I was able to convert my reference file but when I try to convert the attached reads file with "java -jar ConvertFastaForCloud.jar xs_sample.fastq xs_sample.br" I get to following NullPointerException:
Converting xs_sample.fastq into xs.br
10/05/26 10:30:45 WARN util.NativeCodeLoader: Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
Exception in thread "main" java.lang.NullPointerException
I also tried to transform the fastq file to a normal fasta file first with the same result. I am using Cloudburst 1.0.1
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