#1 CIRI2 and CIRI_AS cooperation

[Katarzyna Kozlowska]

Hello,

I have a problem with using CIRI_AS on data from CIRI2. On test data everything seems ok, but on my own data CIRI_AS asks if i use the same sam like in CIRI. I did the same thing on my data, but using previous version of CIRI and everything worked.

Could you help me solve this problem? I would like to use CIRI2, because with trimming reads to one length I loose a lot of data.

Regards,
Kate

[Shrey Gandhi]

I also face the same issue.. Did anyone find the solution to this problem?

[Hao'zhang]

I meet the same problem because my data have been trimmed by fastp.

[Hao'zhang]

Following the suggestion by the author, I will try to use raw reads instead of trimmed reads.