[cilib-devel] [PATCH 0/2] Fitness evaluations correction

[Gary P. <gpa...@gm...>]

The fact that fitness evalautions can be bypassed was not correct. These
patches prevent such ambiguity and result in a cleaner API.

Gary Pampara (2):
  Removed calculateFitness(boolean) from Entity.
  Always increment evaluations problem.

 .../algorithm/MultistartOptimisationAlgorithm.java |    2 +-
 .../cilib/bioinf/rnaprediction/RNAParticle.java    |    2 +-
 .../net/sourceforge/cilib/boa/bee/AbstractBee.java |   10 +---
 .../cilib/clustering/kmeans/KMeans.java            |    6 +-
 .../cilib/cooperative/CooperativeEntity.java       |    9 +--
 .../SelectiveContributionUpdateStrategy.java       |    2 +-
 .../java/net/sourceforge/cilib/ec/Individual.java  |   10 +---
 .../DifferentialEvolutionIterationStrategy.java    |    2 +-
 .../java/net/sourceforge/cilib/entity/Entity.java  |    7 --
 .../java/net/sourceforge/cilib/entity/Harmony.java |   12 +---
 .../crossover/BlendCrossoverStrategy.java          |    4 +-
 .../crossover/OnePointCrossoverStrategy.java       |    4 +-
 .../crossover/UniformCrossoverStrategy.java        |    4 +-
 .../criterion/CriterionBasedMOProblemAdapter.java  |    2 +-
 .../ArchivingIterationStrategy.java                |    4 +-
 .../foundation/NeuralNetworkProblem.java           |    7 +-
 .../CooperativeOptimisationProblemAdapter.java     |    2 +-
 .../net/sourceforge/cilib/problem/MOFitness.java   |    8 +-
 .../cilib/problem/MOOptimisationProblem.java       |   12 ++--
 .../cilib/problem/OptimisationProblem.java         |    4 +-
 .../cilib/problem/OptimisationProblemAdapter.java  |    6 +-
 .../cilib/pso/dynamic/DynamicParticle.java         |    2 +-
 ...NeighbourhoodBestSentriesDetectionStrategy.java |    2 +-
 .../RandomSentriesDetectionStrategy.java           |    2 +-
 .../RandomSentryDetectionStrategy.java             |    4 +-
 .../RandomSentryPointsDetectionStrategy.java       |    2 +-
 .../TopologyBestSentryDetectionStrategy.java       |    2 +-
 .../ArchiveReevaluationResponseStrategy.java       |    4 +-
 ...lutionParticleReevaluationResponseStrategy.java |    2 +-
 .../DominantGuideUpdateStrategy.java               |    4 +-
 .../cilib/pso/particle/AbstractParticle.java       |   10 +---
 .../cilib/pso/particle/MultiObjectiveParticle.java |    2 +-
 .../cilib/pso/particle/ParticleDecorator.java      |    4 +-
 .../cilib/pso/particle/StandardParticle.java       |    4 +-
 .../DEPositionUpdateStrategy.java                  |    4 +-
 .../GCVelocityUpdateStrategy.java                  |    2 +-
 .../calculator/EntityBasedFitnessCalculator.java   |    6 +-
 .../cilib/util/calculator/FitnessCalculator.java   |    4 +-
 .../calculator/PropertyBasedFitnessCalculator.java |    4 +-
 .../StructuredTypeFitnessCalculator.java           |    4 +-
 .../crossover/BlendCrossoverStrategyTest.java      |    2 +-
 .../crossover/OnePointCrossoverStrategyTest.java   |    2 +-
 .../crossover/UniformCrossoverStrategyTest.java    |    2 +-
 .../entity/topologies/VonNeumannTopologyTest.java  |    2 +-
 .../cilib/moo/archive/constrained/ArchiveTest.java |   74 ++++++++++----------
 .../constrained/ConstrainedArchiveTest.java        |    4 +-
 .../solutionweighing/SolutionWeighingTest.java     |   12 ++--
 .../sourceforge/cilib/problem/MOFitnessTest.java   |   10 +--
 48 files changed, 123 insertions(+), 172 deletions(-)