[Chipster-tech] Microarray PCA analysis not starting

[Oliver H. <o....@dk...>]

Hi Petri,

since the new version 4.7.2 the microarray PCA analysis is not working 
anymore.

This is what I get from the server after I start a PCA analysis:


ubuntu@chipstervm1:~$ kubectl get pod
NAME READY   STATUS             RESTARTS        AGE
...
comp-job-f159fc1c-4f60-41cd-8622-dfa7af547b73-ordination-pca.r 0/1     
ImagePullBackOff   0               5m14s


ubuntu@chipstervm1:~$ kubectl logs 
comp-job-f159fc1c-4f60-41cd-8622-dfa7af547b73-ordination-pca.r
Error from server (BadRequest): container "comp-job" in pod 
"comp-job-f159fc1c-4f60-41cd-8622-dfa7af547b73-ordination-pca.r" is 
waiting to start: image can't be pulled

ubuntu@chipstervm1:~$ kubectl describe pod 
comp-job-f159fc1c-4f60-41cd-8622-dfa7af547b73-ordination-pca.r
...
Events:
   Type     Reason     Age                    From Message
   ----     ------     ----                   ---- -------
   Normal   Scheduled  6m32s                  default-scheduler 
Successfully assigned 
default/comp-job-f159fc1c-4f60-41cd-8622-dfa7af547b73-ordination-pca.r 
to chipstervm1
   Normal   Pulling    4m56s (x4 over 6m32s)  kubelet Pulling image 
"docker-registry.rahti.csc.fi/chipster-images-release/comp-20.04-r-deps:v4.7.2"
   Warning  Failed     4m56s (x4 over 6m31s)  kubelet Failed to pull 
image 
"docker-registry.rahti.csc.fi/chipster-images-release/comp-20.04-r-deps:v4.7.2": 
rpc error: code = NotFound desc = failed to pull and unpack image 
"docker-registry.rahti.csc.fi/chipster-images-release/comp-20.04-r-deps:v4.7.2": 
failed to resolve reference 
"docker-registry.rahti.csc.fi/chipster-images-release/comp-20.04-r-deps:v4.7.2": 
docker-registry.rahti.csc.fi/chipster-images-release/comp-20.04-r-deps:v4.7.2: 
not found
   Warning  Failed     4m56s (x4 over 6m31s)  kubelet Error: ErrImagePull
   Warning  Failed     4m43s (x6 over 6m30s)  kubelet Error: 
ImagePullBackOff
   Normal   BackOff    89s (x20 over 6m30s)   kubelet Back-off pulling 
image 
"docker-registry.rahti.csc.fi/chipster-images-release/comp-20.04-r-deps:v4.7.2"

So it seems there is something missing at the docker image site?

Regards,

Oli


-- 

Oliver Heil
Microarray Core Facility
Bioinformatics

German Cancer Research Center (DKFZ)
Foundation under Public Law
Im Neuenheimer Feld 580
69120 Heidelberg
Germany

o....@dk... <mailto:o....@dk...>
Support: www.dkfz.de/gpcf/support/ <https://www.dkfz.de/gpcf/support/>
www.dkfz.de <http://www.dkfz.de>

Research for a Life without Cancer

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