ChEBI / Curator requests / #2474 The OWL build available from the CHEBI FTP site is non-standard

#2474 The OWL build available from the CHEBI FTP site is non-standard

Status: open

Owner: nobody

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Priority: 5

Updated: 2015-10-09

Created: 2015-10-09

Creator: Chris Mungall

Private: No

The chebi.owl available here ftp://ftp.ebi.ac.uk/pub/databases/chebi/ontology/

is potentially confusing to users. It uses an annotation vocabulary that is non-standard and unique to CHEBI.

I recommend you use the standard OWLAPI obo<->owl translation. You can use the latest version of Protege, or a command line tool such as

Robot - https://github.com/ontodev/robot/
owltools/Oort - https://github.com/owlcollab/owltools

If you do this we can also simplify the OBO central build pipeline (at the moment we are forced to make our own CHEBI build using this jenkins job - http://build.berkeleybop.org/job/build-chebi/ )

The OWL build available from the CHEBI FTP site is non-standard

WE HAVE MIGRATED TO GITHUB. https://github.com/ebi-chebi/ChEBI

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#2474 The OWL build available from the CHEBI FTP site is non-standard

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