Recent changes to Home

WikiPage Home modified by bioruan

bioruan — Tue, 29 Jan 2013 17:14:15 -0000

--- v3
+++ v4
@@ -7,4 +7,6 @@
 System requirement
 Passed test (whole genome) on 32bit ubuntu with 2G memory. Recommend 64bit system with >=2G memory

+2013-1-29 Added MAC version
+
 Report bug to ruansun@163.com

WikiPage Home modified by bioruan

bioruan — Tue, 29 Jan 2013 16:45:19 -0000

--- v2
+++ v3
@@ -1,4 +1,6 @@
 CGI-HMM package uses Hidden-Markov Model(HMM) based algorithm to find CpG island(CGI) for whole genome/chromosome sequences, or any other nucleotide sequences in fasta format. It reports length of CGI, start & end position, GC%, OEratio, and average CpG distance in detected CGI regions. It also comes with a GetProb module to calculate initial and transition probability for HMM use.
+
+Note: This is a personal effort without any funding support.

 Source code type: c++

WikiPage Home modified by bioruan

bioruan — Fri, 18 May 2012 00:01:08 -0000

--- v1 
+++ v2 
@@ -1,8 +1,8 @@
-Welcome to your wiki!
-
-This is the default page, edit it as you see fit. To add a new page simply reference it within brackets, e.g.: [SamplePage].
-
-The wiki uses [Markdown](/p/cgi-hmm/wiki/markdown_syntax/) syntax.
-
-[[project_admins]]
-[[download_button]]
+CGI-HMM package uses Hidden-Markov Model(HMM) based algorithm to find CpG island(CGI) for whole genome/chromosome sequences, or any other nucleotide sequences in fasta format. It reports length of CGI, start & end position, GC%, OEratio, and average CpG distance in detected CGI regions. It also comes with a GetProb module to calculate initial and transition probability for HMM use.
+
+Source code type: c++
+
+System requirement
+Passed test (whole genome) on 32bit ubuntu with 2G memory. Recommend 64bit system with >=2G memory
+
+Report bug to ruansun@163.com

WikiPage Home modified by bioruan

bioruan — Thu, 17 May 2012 22:30:58 -0000

Welcome to your wiki! This is the default page, edit it as you see fit. To add a new page simply reference it within brackets, e.g.: [SamplePage]. The wiki uses [Markdown](/p/cgi-hmm/wiki/markdown_syntax/) syntax. [[project_admins]] [[download_button]]