Re: [Cg-pipeline-users] additional predictor

[Lee K. <ls...@gm...>]

I'm returning to the US and back to work on Aug 12. It sounds like a worthy
addition.

 I like prodigal but never bothered to put it in as an option. I think it
could be something optional like genemark and would be preferred if not
using genemark. In this way, CGP would still be able to have a majority for
gene calling even if you don't have genemark.

On Aug 2, 2013, at 15:43, Jay <jhu...@gm...> wrote:

 As far as I know, there is no convenient way of doing this. The
run_prediction script would have to be modified to support running it and
parsing the results.

On 02/08/2013 22:52, kok wrote:

 Is it possible for cg pipeline to include the results of other
*ab-initio *predictor
(eg. prodigal)? Is there any development for this function?
Or if I would like to use prodigal in place of genemark (if only two
predictors allowed), can I convert the results of prodigal into
genemark-like gm_out.lst file for cg pipeline's run_predict as a simple
modification?

- kok -


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