Re: [Cg-pipeline-users] extract ORF sequences from cgpipeline

[Lee K. <ls...@gm...>]

Jay Humphrey actually made a script a while ago, makefna.pl.  It looks like
it will do exactly that.  I should incorporate it so that it spits out the
fasta sequence after the prediction stage.  Good suggestion!


On Wed, Jun 19, 2013 at 10:04 AM, Laure QUINTRIC
<Lau...@if...>wrote:

> Hello,
>
> I would like to know if there is a file generated by cgpipeline containing
> all predicted ORFs nucleotide sequences or if it is easily possible to
> generate it ?
>
> Kind regards.
> Laure
>



-- 
Lee Katz, Ph.D.