Re: [Cg-pipeline-users] Output Q

[Todd Y. <ty...@la...>]

That's just what I needed, thanks for the quick reply :)

On Feb 24, 2011, at 10:44 AM, Jay Humphrey wrote:

> The code is in scripts/run_annotation_genbank.pl
> http://cg-pipeline.svn.sourceforge.net/viewvc/cg-pipeline/cg_pipeline/trunk/scripts/run_annotation_genbank.pl?revision=137&view=markup
> Line 183, try adding before "my $note=remove_tags($newftr)" the following:
> 
> $newftr->remove_tag('uniprot_id');
> $newftr->add_tag_value('uniprot_id',$gene);
> my $note=remove_tags($newftr); #keep old line 183 here
> 
> 
> But then your uniprot_id is gone! Why not just add gene name, instead of replacing uniprot_id?
> 
> $newftr->add_tag_value('gene',$gene);
> my $note=remove_tags($newftr); #keep old line 183 here
> 
> 
> On Thu, Feb 24, 2011 at 5:16 PM, Todd Yilk <ty...@la...> wrote:
> Hello all,
> 
> There's a change I'd like to make to the output .gb file from the annotation stage: I'd like to replace the uniprot_id in the /note section with the name of the gene. Could you point me to where in the code this file is created?
> 
> Thanks,
> 
> Todd Yilk
> Biosciences Division
> Los Alamos National Laboratory
> ------------------------------------------------------------------------------
> Free Software Download: Index, Search & Analyze Logs and other IT data in
> Real-Time with Splunk. Collect, index and harness all the fast moving IT data
> generated by your applications, servers and devices whether physical, virtual
> or in the cloud. Deliver compliance at lower cost and gain new business
> insights. http://p.sf.net/sfu/splunk-dev2dev
> _______________________________________________
> Cg-pipeline-users mailing list
> Cg-...@li...
> https://lists.sourceforge.net/lists/listinfo/cg-pipeline-users
>