Re: [Cg-pipeline-users] Output Q

[Jay H. <jhu...@gm...>]

The code is in scripts/run_annotation_genbank.pl
http://cg-pipeline.svn.sourceforge.net/viewvc/cg-pipeline/cg_pipeline/trunk/scripts/run_annotation_genbank.pl?revision=137&view=markup
Line 183, try adding before "my $note=remove_tags($newftr)" the following:

$newftr->remove_tag('uniprot_id');
$newftr->add_tag_value('uniprot_id',$gene);
my $note=remove_tags($newftr); #keep old line 183 here


But then your uniprot_id is gone! Why not just add gene name, instead of
replacing uniprot_id?

$newftr->add_tag_value('gene',$gene);
my $note=remove_tags($newftr); #keep old line 183 here


On Thu, Feb 24, 2011 at 5:16 PM, Todd Yilk <ty...@la...> wrote:

> Hello all,
>
> There's a change I'd like to make to the output .gb file from the
> annotation stage: I'd like to replace the uniprot_id in the /note section
> with the name of the gene. Could you point me to where in the code this file
> is created?
>
> Thanks,
>
> Todd Yilk
> Biosciences Division
> Los Alamos National Laboratory
>
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