[Celsius-devel] Fwd: [Fwd: Re: celsius support]

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Allen,

I never received an answer to the questions in the forwarded message below.
I am forwarding it to the celsius-dev list per your request.

---------- Forwarded message ----------
From: louis fridkis <lou...@gm...>
Date: Oct 29, 2007 11:55 AM
Subject: Re: [Fwd: Re: celsius support]
To: Marc Carlson <mr...@gm...>, nelsonlab-devel <
nel...@li...>

Marc, Allen

Should I be encouraging R and discouraging XML. I.e. In your opinion, should
we be going in the direction of only supporting R?

P.S. Allen, for backgound/context see Marc's answer in the first message
below and the original question, labelled 3), in the second message below.

On 10/29/07, Marc Carlson <mr...@gm...> wrote:
>
> This is really another web server question but I will tell you what I
> remember.  I think the answer is that the xml was made first.  But for the
> annotations, I wanted the tab file for the R client (the xml was too huge to
> parse easily).  Anyhow, I think that the xml was just never updated with the
> newer fields that were added to the tab format file.  This should all be
> moot if the client is using the R client anyhow since that should get the
> fields they ask for anyways.  At this point this guy is just being nosy.
>
>     Marc
>
>
>
> On 10/29/07, louis fridkis < lou...@gm...> wrote:
> >
> > Marc,
> >
> > Thanks again for your answer. I followed up with a question to Allen and
> > Brian and sent a partial answer to the client.  Here is the next question:
> >
> > 3) The annot table retrieval seems to work fine eg:
> > http://celsius.genomics.ctrl.ucla.edu/service/cel/annots?p=HG-U133A;f=tab
> >
> >
> > When I do the equivalient query returning in xml:
> > http://celsius.genomics.ctrl.ucla.edu/service/cel/annots?p=HG-U133A
> > The tags are different to the column names from the table. And the
> > tissuename/anatomyname are in the 'platform' tag and all the tags values
> > seem to have shifted to the tag to its left.
> >
> > On 10/26/07, Marc Carlson < mr...@gm...> wrote:
> > >
> > > To answer the 1st question, I don't believe that we ever defined those
> > > because we felt they were pretty obvious.  SNID as you know is the internal
> > > ID.  The next set of names are each made of two parts.  tissue, path, sex,
> > > cell, pheno and  dev refer to different ontologies to descibe tissue type,
> > > pathology state, cell type, phenotype, and developmental stage.  The second
> > > part of each name is name, part or accession.  Name is just the common name,
> > > accession is the precise ID from the ontology, and the ontologies are
> > > namespaced themselves, so you know where the information has come from.  For
> > > example MA is the mouse anatomy ontology, which is what is used for the
> > > tissue type annotations...  I don't remember what "part" stands for anymore,
> > > but it looks like its just the type of annotation (like allenday hand)
> > > though you had better check this last one over with Allen...
> > >
> > > Unfortunately, for your second question, this is more about the web
> > > server, and that is Allens domain.  The R package I wrote has man pages.
> > > And I think there are web pages telling about the web service (there
> > > certainly used to be).  Allen or Brian would probably know where those are.
> > >
> > > There should be at least two kinds of documentation for the web
> > > service.  One is the specification which tells what kind of info is supposed
> > > to be in each part of a URL.  Allen was working on this with the DAS guys.
> > > The other part is a how to use the web service section in the wiki which was
> > > put together in part to get the paper published.
> > >
> > >
> > >     Marc
> > >
> > >
> > >
> > >
> > > On 10/26/07, louis fridkis < lou...@gm...> wrote:
> > > >
> > > > Marc,
> > > >
> > > > Here's the next question:
> > > >
> > > > 2) The annot table retrieval seems to work fine eg:
> > > > http://celsius.genomics.ctrl.ucla.edu/service/cel/annots?p=HG-U133A;f=tab
> > > >
> > > > Where can I find the definitions of the column headings? I know some
> > > > are obvious, but best to make sure
> > > >
> > > > I have a similar question, which might help me to answere questions
> > > > like this without having to bother you. My question is:
> > > >
> > > > lou 1) You have shown me how to see the man pages in R, but how can
> > > > I find man pages, or other documentation, for commands of the type in
> > > > question 2) above, which are embedded in a URL?
> > > >
> > > > Have a good weekend,
> > > >
> > > > On 10/25/07, louis fridkis < lou...@gm...> wrote:
> > > > >
> > > > > Marc,
> > > > >
> > > > > Thanks again. With G-d's help I will send you another question
> > > > > tomorrow.
> > > > >
> > > > > On 10/25/07, Marc Carlson < mr...@gm...> wrote:
> > > > > >
> > > > > >
> > > > > > Yeah I think that web site is probably just out of date.  I
> > > > > > don't maintain the website, only the package.  The true location for the
> > > > > > documentation for an R package is supposed to be within the package itself.
> > > > > > One of these days I aim to get a proper vignette written for the celsius
> > > > > > package, but in the meantime, all the directions you need should need should
> > > > > > be included in the standard man pages.  This is better because when you run
> > > > > > 'R CMD check celsius' on the package all of the examples in the INTERNAL man
> > > > > > pages should get TESTED.  The web page is (unfortunately) completely free to
> > > > > > become horribly out of date and there is little that I can do about that...
> > > > > >
> > > > > > In fact I don't even recognize that web site anymore...  So this
> > > > > > particular question has very little to do with me.  I just wrote the R
> > > > > > package.  If there is something to do with the R package, then I can help
> > > > > > you.  If its the web server then it's either Allen or possibly someone
> > > > > > else...
> > > > > >
> > > > > >     Marc
> > > > > >
> > > > > >
> > > > > >
> > > > > >
> > > > > >
> > > > > > On 10/25/07, louis fridkis < lou...@gm...> wrote:
> > > > > > >
> > > > > > > Marc,
> > > > > > >
> > > > > > > Thanks again, your answer to my question was helpful as I can
> > > > > > > now find the man pages. Let's do 1 question at a time. Here's today's
> > > > > > > question:
> > > > > > >
> > > > > > > 1) in the example in the documentation on:
> > > > > > > http://celsius.genomics.ctrl.ucla.edu/doc/Celsius/Controller/Service/Cel.htm.
> > > > > > > The url uses - http://jugular.ctrl.ucla.edu:4000 - doesn't
> > > > > > > work. Should it be changed to:
> > > > > > > http://celsius.genomics.ctrl.ucla.edu  in the documentation??
> > > > > > >
> > > > > > > Thanks,
> > > > > > >
> > > > > > > On 10/25/07, Marc Carlson <mr...@gm...> wrote:
> > > > > > > >
> > > > > > > > Yes.  But you have to send me more information.  Such as
> > > > > > > > what are the questions exactly?  The email before this one was nearly
> > > > > > > > impossible to follow.  And I just can't answer if I don't understand the
> > > > > > > > questions.
> > > > > > > >
> > > > > > > > If you want to get the help pages for celsius, you should
> > > > > > > > only have to launch R, load the celsius packges with library(celsius) and
> > > > > > > > then type ?celsius (for the main celsius help page - as an example).  Once
> > > > > > > > the page loads you should be able to scroll up and down to read it (it
> > > > > > > > should launch inside of less).  There are also help pages for most of the
> > > > > > > > other functions.  You could also always look at the source for these help
> > > > > > > > pages by looking at the man folder that the package installs but its easier
> > > > > > > > to read inside of R since that is where it will be formatted for you.  The
> > > > > > > > main celsius page should list all the basic functions.
> > > > > > > >
> > > > > > > > Hope this helps,
> > > > > > > >
> > > > > > > >     Marc
> > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > > > On 10/23/07, louis fridkis <lou...@gm...> wrote:
> > > > > > > > >
> > > > > > > > > Marc,
> > > > > > > > >
> > > > > > > > > Is it possible that you could help me answer one of these
> > > > > > > > > questions every few days?
> > > > > > > > >
> > > > > > > > > On 10/17/07, louis fridkis < lou...@gm...> wrote:
> > > > > > > > > >
> > > > > > > > > > Marc,
> > > > > > > > > >
> > > > > > > > > > Thanks, I really appreciate your help. How do I access
> > > > > > > > > > the man pages? Is blank the same as 0? These are my questions. Here are some
> > > > > > > > > > more questions from the client (I have numbered them so there is a unique
> > > > > > > > > > number for each question regardless of which batch [first or second]):
> > > > > > > > > >
> > > > > > > > > >    6.  a method to check which platforms are available
> > > > > > > > > > for their annotations
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > http://celsius.genomics.ctrl.ucla.edu/service/platform/platforms
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > return all available platforms
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > <platforms>
> > > > > > > > > >
> > > > > > > > > >   <platform name="" count="467" annotated="-1"/>
> > > > > > > > > >
> > > > > > > > > >   <platform name="1286_s01" count="41" annotated="-1"/>
> > > > > > > > > >
> > > > > > > > > >   <platform name="AG" count="141" annotated="1"/>
> > > > > > > > > >
> > > > > > > > > >   ....
> > > > > > > > > >
> > > > > > > > > > </platforms>
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > ?? not sure the value -1, 1 for attribute annotated
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >    7. their host name to check my program is reachable
> > > > > > > > > >
> > > > > > > > > > giving the host name (celsius.genomics.ctrl.ucla.edu),
> > > > > > > > > >
> > > > > > > > > > a code shown below returns whether their web page is
> > > > > > > > > > reachable or not and
> > > > > > > > > >
> > > > > > > > > > it also return ip address ( 164.67.183.98)
> > > > > > > > > >
> > > > > > > > > > when I enter this ip address in the browser (http://164.67.183.98),
> > > > > > > > > > it redirects and shows
> > > > > > > > > > http://genomics.ctrl.ucla.edu/pmwiki/  (2)
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > Can I use (2) web page to get to know whether
> > > > > > > > > > http://celsius.genomics.ctrl.ucla.edu/ is running or not
> > > > > > > > > > ?
> > > > > > > > > >
> > > > > > > > > > Or are there other ways to check by a program?
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > public static void main(String[] args) {
> > > > > > > > > >
> > > > > > > > > >         try {
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > InetAddress address = InetAddress.getByName("celsius.genomics.ctrl.ucla.edu
> > > > > > > > > > ");
> > > > > > > > > >
> > > > > > > > > >        System.out.println("Name: " + address.getHostName
> > > > > > > > > > ());
> > > > > > > > > >
> > > > > > > > > >        System.out.println("Addr: " +
> > > > > > > > > > address.getHostAddress());
> > > > > > > > > >
> > > > > > > > > >        System.out.println ("Reach: " +
> > > > > > > > > > address.isReachable(60000));
> > > > > > > > > >
> > > > > > > > > >      }
> > > > > > > > > >
> > > > > > > > > >      catch (UnknownHostException e) {
> > > > > > > > > >
> > > > > > > > > >        System.err.println("Unable to lookup web.mit.edu
> > > > > > > > > > ");
> > > > > > > > > >
> > > > > > > > > >      }
> > > > > > > > > >
> > > > > > > > > >      catch (IOException e) {
> > > > > > > > > >
> > > > > > > > > >        System.err.println("Unable to reach web.mit.edu");
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >      }
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >    8. please shift the attribute values to right :
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > http://celsius.genomics.ctrl.ucla.edu/service/cel/annots?p=HG-U133A
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > <cel id="SN:1000008" platform="hippocampus"
> > > > > > > > > > anatomyname="allenday_hand" anatomypart="MA:0000191" anatomyacc=""
> > > > > > > > > > pathology="" pathologypart="" pathologyacc="female"
> > > > > > > > > > sexname="allenday_comp_sex" sexpart="null:female" sexacc="" cell=""
> > > > > > > > > > cellpart="" cellacc="" phenotypename="" phenotypepart="" phenotypeacc=""
> > > > > > > > > > devname="" devpart="" devacc=""/>
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > And not repeated a value more than once :
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > <cel id="SN:1000252" platform="extraocular skeletal
> > > > > > > > > > muscle|extraocular skeletal muscle|extraocular skeletal muscle|extraocular
> > > > > > > > > > skeletal muscle"
> > > > > > > > > > anatomyname="allenday_hand|allenday_hand|rjandali_hand|rjandali_hand"
> > > > > > > > > > anatomypart="MA:0001271|MA:0001271|MA:0001271|MA:0001271"
> > > > > > > > > > anatomyacc="normal|normal|normal|normal"
> > > > > > > > > > pathology="allenday_hand|rjandali_hand|allenday_hand|rjandali_hand"
> > > > > > > > > > pathologypart="MPATH:458|MPATH:458|MPATH:458|MPATH:458"
> > > > > > > > > > pathologyacc="male|male|male|male"
> > > > > > > > > > sexname="allenday_comp_sex|allenday_comp_sex|allenday_comp_sex|allenday_comp_sex"
> > > > > > > > > > sexpart="null:male|null:male|null:male|null:male" sexacc=""
> > > > > > > > > > cell="rjandali_hand|rjandali_hand|rjandali_hand|rjandali_hand"
> > > > > > > > > > cellpart="CL:0000001|CL:0000001|CL:0000001|CL:0000001" cellacc="normal
> > > > > > > > > > phenotype|normal phenotype|normal phenotype|normal phenotype"
> > > > > > > > > > phenotypename="rjandali_hand|rjandali_hand|rjandali_hand|rjandali_hand"
> > > > > > > > > > phenotypepart="MP:0002873|MP:0002873|MP:0002873|MP:0002873"
> > > > > > > > > > phenotypeacc="adult|adult|adult|adult"
> > > > > > > > > > devname="rjandali_hand|rjandali_hand|rjandali_hand|rjandali_hand"
> > > > > > > > > > devpart="null:adult|null:adult|null:adult|null:adult" devacc=""/>
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >    9. /service/cel/annots method
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >         l     optional        stringency level.
> > > > > > > > > > annotations below level are suppressed (i.e. considered
> > > > > > > > > > as NULL).
> > > > > > > > > >
> > > > > > > > > >                                defaults to 0.
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >                        level   type
> > > > > > > > > >
> > > > > > > > > >                         =====   =====
> > > > > > > > > >
> > > > > > > > > >                         100     assigned by web robot,
> > > > > > > > > > experimental
> > > > > > > > > >
> > > > > > > > > >                         200     assigned by curator
> > > > > > > > > > robot, experimental
> > > > > > > > > >
> > > > > > > > > >                         300     assigned by web robot
> > > > > > > > > >
> > > > > > > > > >                         400     assigned by curator
> > > > > > > > > > robot
> > > > > > > > > >
> > > > > > > > > >                         500     assigned by web user
> > > > > > > > > >
> > > > > > > > > >                         600     assigned by curator
> > > > > > > > > >
> > > > > > > > > >         Are these levels 1, 2,,6 instead of 100, 200,
> > > > > > > > > > 600 ?
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > For example When we enter  the  url :
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > http://celsius.genomics.ctrl.ucla.edu/service/cel/annots?p=HG-U133A;f=mask;m=MA:0000168
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > it returns
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > #SNID   mask=MA:0000168 level=0
> > > > > > > > > >
> > > > > > > > > > SN:1000008     1
> > > > > > > > > >
> > > > > > > > > > SN:1000009     1
> > > > > > > > > >
> > > > > > > > > > SN:1000010     1
> > > > > > > > > >
> > > > > > > > > > SN:1000011     1
> > > > > > > > > >
> > > > > > > > > > SN:1000012     1
> > > > > > > > > >
> > > > > > > > > > SN:1000013     1
> > > > > > > > > >
> > > > > > > > > > SN:1000014     1
> > > > > > > > > >
> > > > > > > > > > SN:1000015     1
> > > > > > > > > >
> > > > > > > > > > SN:1000016     1
> > > > > > > > > >
> > > > > > > > > > SN:1000017     1
> > > > > > > > > >
> > > > > > > > > > SN:1000018     1
> > > > > > > > > >
> > > > > > > > > > SN:1000019     1
> > > > > > > > > >
> > > > > > > > > > SN:1000020     1
> > > > > > > > > >
> > > > > > > > > > SN:1000021     1
> > > > > > > > > >
> > > > > > > > > > SN:1000081
> > > > > > > > > >
> > > > > > > > > > SN:1000098     0
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > This level (level=0) has the same meaning of the
> > > > > > > > > > optional parameter l which has
> > > > > > > > > >
> > > > > > > > > > level   type
> > > > > > > > > >
> > > > > > > > > > =====   =====
> > > > > > > > > >
> > > > > > > > > > 100     assigned by web robot, experimental
> > > > > > > > > >
> > > > > > > > > > 200     assigned by curator robot, experimental
> > > > > > > > > >
> > > > > > > > > > 300     assigned by web robot
> > > > > > > > > >
> > > > > > > > > > 400     assigned by curator robot
> > > > > > > > > >
> > > > > > > > > > 500     assigned by web user
> > > > > > > > > >
> > > > > > > > > > 600     assigned by curator
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > Or not.
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > If they have the same meaning,
> > > > > > > > > >
> > > > > > > > > > 100 should be replaced with 1 and so on
> > > > > > > > > >
> > > > > > > > > > On 10/12/07, Marc Carlson <mr...@gm...> wrote:
> > > > > > > > > > >
> > > > > > > > > > > Louis,
> > > > > > > > > > >
> > > > > > > > > > > I have not had time to look at questions 1-3 yet,
> > > > > > > > > > > though I suspect that the documentation is just referring to an older
> > > > > > > > > > > instance of the web server (now decomissioned).  As for 4 and 5, the
> > > > > > > > > > > ontology searches are always recursive through the ontology (ie. you should
> > > > > > > > > > > ALWAYS get all the child nodes for a term - if you want to only find a more
> > > > > > > > > > > specific term, then you should use THAT term instead otherwise it will get
> > > > > > > > > > > lumped along with the less specific term).  Also, 1 is true, 0 is false and
> > > > > > > > > > > ! indicates that there is a conflict about the annotations for that sample.
> > > > > > > > > > > I think that the man pages detailed this, but its been a while since I have
> > > > > > > > > > > been "in there".
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > >     Marc
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > > On 10/10/07, Marc Carlson < mca...@fh...> wrote:
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > > ---------- Forwarded message ----------
> > > > > > > > > > > > From: "louis fridkis" < lou...@gm...>
> > > > > > > > > > > > To: "Marc Carlson" < mca...@fh...>
> > > > > > > > > > > > Date: Wed, 10 Oct 2007 16:25:07 -0700
> > > > > > > > > > > > Subject: Re: celsius support
> > > > > > > > > > > > Marc,
> > > > > > > > > > > >
> > > > > > > > > > > > The client wants to allow users to download affy
> > > > > > > > > > > > data (rather than having to create individual download scripts for each
> > > > > > > > > > > > rep).
> > > > > > > > > > > >
> > > > > > > > > > > > What they would like to do is:
> > > > > > > > > > > > 1) search all experiments and display some of the
> > > > > > > > > > > > experimental level annotation eg title, species
> > > > > > > > > > > >
> > > > > > > > > > > > 2) filter eg by array type, species, disease term
> > > > > > > > > > > >
> > > > > > > > > > > > 3) select an experiment
> > > > > > > > > > > >
> > > > > > > > > > > > 4) download cel files and associated annotation from
> > > > > > > > > > > > chosen experiment
> > > > > > > > > > > >
> > > > > > > > > > > > Here are his specific questions:
> > > > > > > > > > > >
> > > > > > > > > > > > 1) in the example in the documentation on: http://celsius.genomics.ctrl.ucla.edu/doc/Celsius/Controller/Service/Cel.htm
> > > > > > > > > > > > . The url uses - http://jugular.ctrl.ucla.edu:4000 -
> > > > > > > > > > > > doesn't work. Should it be changed to: http://celsius.genomics.ctrl.ucla.edu
> > > > > > > > > > > >   in the documentation??
> > > > > > > > > > > >
> > > > > > > > > > > > 2) The annot table retrieval seems to work fine eg:
> > > > > > > > > > > > http://celsius.genomics.ctrl.ucla.edu/service/cel/annots?p=HG-U133A;f=tab
> > > > > > > > > > > >
> > > > > > > > > > > > Where can I find the definitions of the column
> > > > > > > > > > > > headings? I know some are obvious, but best to make sure
> > > > > > > > > > > >
> > > > > > > > > > > > 3) when I do the equivalient query returning in xml:
> > > > > > > > > > > > http://celsius.genomics.ctrl.ucla.edu/service/cel/annots?p=HG-U133A
> > > > > > > > > > > >
> > > > > > > > > > > > The tags are different to the column names from the
> > > > > > > > > > > > table. And the tissuename/anatomyname are in the 'platform' tag and all the
> > > > > > > > > > > > tags values seem to have shifted to the tag to its left.
> > > > > > > > > > > >
> > > > > > > > > > > > 4)not quite sure how to interpret the results if we
> > > > > > > > > > > > want to say retrieve all the hgu-133a cel files that have associated with
> > > > > > > > > > > > brain tissue (MA:0000168).eg
> > > > > > > > > > > >
> > > > > > > > > > > > http://celsius.genomics.ctrl.ucla.edu/service/cel/annots?p=HG-U133A;f=mask;m=MA:0000168
> > > > > > > > > > > > Returns something like:
> > > > > > > > > > > > #SNID   mask=MA:0000168 level=0
> > > > > > > > > > > > SN:1000008      1
> > > > > > > > > > > > SN:1000009      1
> > > > > > > > > > > > SN:1000081
> > > > > > > > > > > > SN:1000098      0
> > > > > > > > > > > > SN:1000170      0
> > > > > > > > > > > > SN:1000221      0
> > > > > > > > > > > > Etc
> > > > > > > > > > > > Presumably: 1=true i.e. this sample is associated
> > > > > > > > > > > > with brain tissue
> > > > > > > > > > > >
> > > > > > > > > > > > What is the difference between "0" and " " (blank)
> > > > > > > > > > > > and what does "!" mean?
> > > > > > > > > > > >
> > > > > > > > > > > > 5) In the above example if 4 I searched for the
> > > > > > > > > > > > 'brain' ontology group, MA:0000168. Presumably this returns all child nodes
> > > > > > > > > > > > of this ontology which is why SN:1000008 and SN:1000009 returned 1 even
> > > > > > > > > > > > though they do not mention brain or MA:0000168?
> > > > > > > > > > > >
> > > > > > > > > > > > Thanks,
> > > > > > > > > > > >
> > > > > > > > > > > > On 10/10/07, Marc Carlson < mca...@fh...>
> > > > > > > > > > > > wrote:
> > > > > > > > > > > > >
> > > > > > > > > > > > > louis fridkis wrote:
> > > > > > > > > > > > > > Marc,
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > Are you available to help with a Celsius user's
> > > > > > > > > > > > > questions?
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > --
> > > > > > > > > > > > > > Lou Fridkis
> > > > > > > > > > > > > > UCLA Geffen School of Medicine
> > > > > > > > > > > > > > Department of Human Genetics
> > > > > > > > > > > > > > Nelson Lab
> > > > > > > > > > > > > > 695 Charles E Young Drive S.
> > > > > > > > > > > > > > Los Angeles, CA 90095 USA
> > > > > > > > > > > > > > 310-825-7920
> > > > > > > > > > > > > I can take a stab at it.  I don't have gobs of
> > > > > > > > > > > > > free time, but I want to
> > > > > > > > > > > > > support this package because I intend to polish it
> > > > > > > > > > > > > up more and submit it
> > > > > > > > > > > > > to bioconductor eventually.
> > > > > > > > > > > > >
> > > > > > > > > > > > >     Marc
> > > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > > --
> > > > > > > > > > > > Lou Fridkis
> > > > > > > > > > > > UCLA Geffen School of Medicine
> > > > > > > > > > > > Department of Human Genetics
> > > > > > > > > > > > Nelson Lab
> > > > > > > > > > > > 695 Charles E Young Drive S.
> > > > > > > > > > > > Los Angeles, CA 90095 USA
> > > > > > > > > > > > 310-825-7920
> > > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > --
> > > > > > > > > > Lou Fridkis
> > > > > > > > > > UCLA Geffen School of Medicine
> > > > > > > > > > Department of Human Genetics
> > > > > > > > > > Nelson Lab
> > > > > > > > > > 695 Charles E Young Drive S.
> > > > > > > > > > Los Angeles, CA 90095 USA
> > > > > > > > > > 310-825-7920
> > > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > > > --
> > > > > > > > > Lou Fridkis
> > > > > > > > > UCLA Geffen School of Medicine
> > > > > > > > > Department of Human Genetics
> > > > > > > > > Nelson Lab
> > > > > > > > > 695 Charles E Young Drive S.
> > > > > > > > > Los Angeles, CA 90095 USA
> > > > > > > > > 310-825-7920
> > > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > > >
> > > > > > > --
> > > > > > > Lou Fridkis
> > > > > > > UCLA Geffen School of Medicine
> > > > > > > Department of Human Genetics
> > > > > > > Nelson Lab
> > > > > > > 695 Charles E Young Drive S.
> > > > > > > Los Angeles, CA 90095 USA
> > > > > > > 310-825-7920
> > > > > > >
> > > > > >
> > > > > >
> > > > >
> > > > >
> > > > > --
> > > > > Lou Fridkis
> > > > > UCLA Geffen School of Medicine
> > > > > Department of Human Genetics
> > > > > Nelson Lab
> > > > > 695 Charles E Young Drive S.
> > > > > Los Angeles, CA 90095 USA
> > > > > 310-825-7920
> > > > >
> > > >
> > > >
> > > >
> > > > --
> > > > Lou Fridkis
> > > > UCLA Geffen School of Medicine
> > > > Department of Human Genetics
> > > > Nelson Lab
> > > > 695 Charles E Young Drive S.
> > > > Los Angeles, CA 90095 USA
> > > > 310-825-7920
> > > >
> > >
> > >
> >
> >
> > --
> > Lou Fridkis
> > UCLA Geffen School of Medicine
> > Department of Human Genetics
> > Nelson Lab
> > 695 Charles E Young Drive S.
> > Los Angeles, CA 90095 USA
> > 310-825-7920
> >
>
>

-- 
Lou Fridkis
UCLA Geffen School of Medicine
Department of Human Genetics
Nelson Lab
695 Charles E Young Drive S.
Los Angeles, CA 90095 USA
310-825-7920

-- 
Lou Fridkis
UCLA Geffen School of Medicine
Department of Human Genetics
Nelson Lab
695 Charles E Young Drive S.
Los Angeles, CA 90095 USA
310-825-7920