Re: [Celsius-users] question concerning "celsius"

[Allen D. <all...@uc...>]

Also, you can specify tab-delimited format.  This helps to read into R:

http://celsius.genomics.ctrl.ucla.edu/service/search/cel_accession?q=GEO:GSM143364+GEO:GSM143367;f=tab

On Thu, Jun 12, 2008 at 6:10 PM, Allen Day <all...@uc...> wrote:
> Hi Katrin,
>
> CCing my reply to the celsius-users list, you may want to subscribe.
>
> In short, yes.  You are able to perform SN -> GSM mapping.  I don't
> have access to R right now, but you can do it like this:
>
> http://celsius.genomics.ctrl.ucla.edu/service/search/cel_accession?q=GEO:GSM143364+GEO:GSM143367
>
> -Allen
>
> On Mon, Jun 9, 2008 at 1:21 AM, Katrin Juerchott
> <Jue...@mp...> wrote:
>> Dear Dr. Day,
>>
>> I am a bioinformatics postdoc at the University of Potsdam (Germany) . Searching for approaches to integrate different Affymetrix data sets, I found the "celsius" package. Testing worked very nicely, but at one point I didn't make progress and hope that you could help me.
>>
>> Concerning the samples in the package description, in case I would be interested only in the liver samples of the GSE6210 record or would like to distinguish between liver and muscle samples, is there any possibility to map the submitter cel IDs (e.g. GSM143364, GSM143367 etc) to the celsius SN Identifiers? "mapIdToCelsius" gives me the SN Identifiers for the corresponding GSE ID. But is there a way to find out which SN ID corresponds to which cel file?
>>
>> Thank you very much for your help!
>> Sincerely yours,
>>
>> Kathrin
>>
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>>
>>
>
>
>
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