Re: [Celsius-users] Celsius data snapshots

[Bret H. <ja...@ga...>]

Hello,

I need to re-provision the host celean.genome.ucla.edu with CentOS 4.6 so that we can do a clean deployment of Celsius with the packages currently available in the Biopackages repository. The snapshot data should be available again later this evening. Sorry for the inconvenience.

-bret

On Tue, May 27, 2008 at 01:37:43PM -0600, Bret Harry wrote:
> Thanks Allen,
> 
> The snapshot data is available at the current URL:
> 
> http://celean.genome.ucla.edu//projects/celsius/current/
> 
> Please let me know if you have any access issues.
> 
> -bret
> 
> 
> On Tue, May 27, 2008 at 11:52:31AM -0700, Allen Day wrote:
> > Hi Alexander,
> > 
> > I noticed you were downloading a lot of data last week.  Not sure if
> > this is too late for your current round of downloading, but we've just
> > put up a first Celsius data snapshot.  Basically, we take the RMA
> > processed data for all arrays, and store them into binary files, one
> > per arraydesign.  The binary files are indexed.  After that, we apply
> > some QC methods to remove what look like "bad" arrays.
> > 
> > Then, you can retrieve data from these files using the indexes.  I
> > have written some simple R and Perl code to do this.  It can operate
> > on a local file, or can read from the binary files over HTTP.  It's
> > quite fast -- even accessing the binary files over HTTP is much faster
> > than querying the current DAS/2 server.
> > 
> > Bret, what is the URL to these data?
> > 
> > -Allen
> > 
> > 
> > On 5/13/08, Alexander Ivliev <ivl...@gm...> wrote:
> > > Hi Allen,
> > >
> > >  Thanks. I will indeed register and subscribe to the mailing list when
> > >  the web-site is online again.
> > >
> > >  Best regards,
> > >
> > > Alexander
> > >
> > >
> > >  On Wed, May 14, 2008 at 2:02 AM, Allen Day <all...@gm...> wrote:
> > >  > Hi Alexander,
> > >  >
> > >  >  I think the database may be offline for maintenance.  Bret (cced here)
> > >  >  can tell you more.  I suggest that you subscribe to the celsius-users
> > >  >  mailing list (also cced here) to receive notifications of outages in
> > >  >  the future.
> > >  >
> > >  >  Best,
> > >  >  Allen
> > >  >
> > >  >
> > >  >
> > >  >  On Tue, May 13, 2008 at 2:38 PM, Alexander Ivliev
> > >  >  <ivl...@gm...> wrote:
> > >  >  > Hi Allen,
> > >  >  >
> > >  >  >  I am using your Celsius database and find it very helpful. Currently
> > >  >  >  it seems that the samples' annotations are unavailable through the
> > >  >  >  web-site (for example, for SN:1000082, SN:1005549 and others). The
> > >  >  >  problem persists for a few days. I am writing to make sure you are
> > >  >  >  aware of the problem. Is it a temporary one?
> > >  >  >
> > >  >  >  Best regards,
> > >  >  >  Alexander Ivliev
> > >  >  >  5th year student,
> > >  >  >  Moscow State University, Russia
> > >  >  >
> > >  >
> > >  >
> > >  >
> > >  >  --
> > >  >  allenday.skype
> > >  >  +1 (415) 335-4654 (office)
> > >  >  +1 (310) 804-5304 (mobile)
> > >  >  +1 (515) 474-9337 (fax)
> > >  >
> > >
> > 
> > 
> > -- 
> > allenday.skype
> > +1 (415) 335-4654 (office)
> > +1 (310) 804-5304 (mobile)
> > +1 (515) 474-9337 (fax)