Re: [Celsius-users] Celsius-users Digest, Vol 4, Issue 2

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At ~1000 samples a day, how many total samples? 

-bret

On Wed, May 28, 2008 at 01:32:14AM +0400, Alexander Ivliev wrote:
> Hi Allen,
> 
> Thank you for the notice. I am interested in the new things you
> develop and the QC assessments can be a useful addition. The
> perspective to increase the rate of downloading is also a good thing
> (currently I am downloading at a rate of ~1000 samples a day).
> 
> I am familiar with Perl and R. It would be interesting to obtain some
> of the QC-checked data. Is it possible to learn which of the samples
> are "bad" without downloading the measurements themselves?
> 
> Thanks,
> Alexander
> 
> On Tue, May 27, 2008 at 11:07 PM,
> <cel...@li...> wrote:
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> > Today's Topics:
> >
> >   1. Celsius data snapshots (Allen Day)
> >
> >
> > ----------------------------------------------------------------------
> >
> > Message: 1
> > Date: Tue, 27 May 2008 11:52:31 -0700
> > From: "Allen Day" <all...@gm...>
> > Subject: [Celsius-users] Celsius data snapshots
> > To: "Alexander Ivliev" <ivl...@gm...>
> > Cc: cel...@li...
> > Message-ID:
> >        <5c2...@ma...>
> > Content-Type: text/plain; charset=ISO-8859-1
> >
> > Hi Alexander,
> >
> > I noticed you were downloading a lot of data last week.  Not sure if
> > this is too late for your current round of downloading, but we've just
> > put up a first Celsius data snapshot.  Basically, we take the RMA
> > processed data for all arrays, and store them into binary files, one
> > per arraydesign.  The binary files are indexed.  After that, we apply
> > some QC methods to remove what look like "bad" arrays.
> >
> > Then, you can retrieve data from these files using the indexes.  I
> > have written some simple R and Perl code to do this.  It can operate
> > on a local file, or can read from the binary files over HTTP.  It's
> > quite fast -- even accessing the binary files over HTTP is much faster
> > than querying the current DAS/2 server.
> >
> > Bret, what is the URL to these data?
> >
> > -Allen
> >
> >
> > On 5/13/08, Alexander Ivliev <ivl...@gm...> wrote:
> >> Hi Allen,
> >>
> >>  Thanks. I will indeed register and subscribe to the mailing list when
> >>  the web-site is online again.
> >>
> >>  Best regards,
> >>
> >> Alexander
> >>
> >>
> >>  On Wed, May 14, 2008 at 2:02 AM, Allen Day <all...@gm...> wrote:
> >>  > Hi Alexander,
> >>  >
> >>  >  I think the database may be offline for maintenance.  Bret (cced here)
> >>  >  can tell you more.  I suggest that you subscribe to the celsius-users
> >>  >  mailing list (also cced here) to receive notifications of outages in
> >>  >  the future.
> >>  >
> >>  >  Best,
> >>  >  Allen
> >>  >
> >>  >
> >>  >
> >>  >  On Tue, May 13, 2008 at 2:38 PM, Alexander Ivliev
> >>  >  <ivl...@gm...> wrote:
> >>  >  > Hi Allen,
> >>  >  >
> >>  >  >  I am using your Celsius database and find it very helpful. Currently
> >>  >  >  it seems that the samples' annotations are unavailable through the
> >>  >  >  web-site (for example, for SN:1000082, SN:1005549 and others). The
> >>  >  >  problem persists for a few days. I am writing to make sure you are
> >>  >  >  aware of the problem. Is it a temporary one?
> >>  >  >
> >>  >  >  Best regards,
> >>  >  >  Alexander Ivliev
> >>  >  >  5th year student,
> >>  >  >  Moscow State University, Russia
> >>  >  >
> >>  >
> >>  >
> >>  >
> >>  >  --
> >>  >  allenday.skype
> >>  >  +1 (415) 335-4654 (office)
> >>  >  +1 (310) 804-5304 (mobile)
> >>  >  +1 (515) 474-9337 (fax)
> >>  >
> >>
> >
> >
> > --
> > allenday.skype
> > +1 (415) 335-4654 (office)
> > +1 (310) 804-5304 (mobile)
> > +1 (515) 474-9337 (fax)
> >
> >
> >
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> > End of Celsius-users Digest, Vol 4, Issue 2
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