Re: [Celsius-users] Celsius data snapshots

[Alexander I. <ivl...@gm...>]

Found the link. Thanks.

Alexander

On Tue, May 27, 2008 at 11:37 PM, Bret Harry <ja...@ga...> wrote:
> Thanks Allen,
>
> The snapshot data is available at the current URL:
>
> http://celean.genome.ucla.edu//projects/celsius/current/
>
> Please let me know if you have any access issues.
>
> -bret
>
>
> On Tue, May 27, 2008 at 11:52:31AM -0700, Allen Day wrote:
>> Hi Alexander,
>>
>> I noticed you were downloading a lot of data last week.  Not sure if
>> this is too late for your current round of downloading, but we've just
>> put up a first Celsius data snapshot.  Basically, we take the RMA
>> processed data for all arrays, and store them into binary files, one
>> per arraydesign.  The binary files are indexed.  After that, we apply
>> some QC methods to remove what look like "bad" arrays.
>>
>> Then, you can retrieve data from these files using the indexes.  I
>> have written some simple R and Perl code to do this.  It can operate
>> on a local file, or can read from the binary files over HTTP.  It's
>> quite fast -- even accessing the binary files over HTTP is much faster
>> than querying the current DAS/2 server.
>>
>> Bret, what is the URL to these data?
>>
>> -Allen
>>
>>
>> On 5/13/08, Alexander Ivliev <ivl...@gm...> wrote:
>> > Hi Allen,
>> >
>> >  Thanks. I will indeed register and subscribe to the mailing list when
>> >  the web-site is online again.
>> >
>> >  Best regards,
>> >
>> > Alexander
>> >
>> >
>> >  On Wed, May 14, 2008 at 2:02 AM, Allen Day <all...@gm...> wrote:
>> >  > Hi Alexander,
>> >  >
>> >  >  I think the database may be offline for maintenance.  Bret (cced here)
>> >  >  can tell you more.  I suggest that you subscribe to the celsius-users
>> >  >  mailing list (also cced here) to receive notifications of outages in
>> >  >  the future.
>> >  >
>> >  >  Best,
>> >  >  Allen
>> >  >
>> >  >
>> >  >
>> >  >  On Tue, May 13, 2008 at 2:38 PM, Alexander Ivliev
>> >  >  <ivl...@gm...> wrote:
>> >  >  > Hi Allen,
>> >  >  >
>> >  >  >  I am using your Celsius database and find it very helpful. Currently
>> >  >  >  it seems that the samples' annotations are unavailable through the
>> >  >  >  web-site (for example, for SN:1000082, SN:1005549 and others). The
>> >  >  >  problem persists for a few days. I am writing to make sure you are
>> >  >  >  aware of the problem. Is it a temporary one?
>> >  >  >
>> >  >  >  Best regards,
>> >  >  >  Alexander Ivliev
>> >  >  >  5th year student,
>> >  >  >  Moscow State University, Russia
>> >  >  >
>> >  >
>> >  >
>> >  >
>> >  >  --
>> >  >  allenday.skype
>> >  >  +1 (415) 335-4654 (office)
>> >  >  +1 (310) 804-5304 (mobile)
>> >  >  +1 (515) 474-9337 (fax)
>> >  >
>> >
>>
>>
>> --
>> allenday.skype
>> +1 (415) 335-4654 (office)
>> +1 (310) 804-5304 (mobile)
>> +1 (515) 474-9337 (fax)
>