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Re: [Celsius-users] Celsius-users Digest, Vol 4, Issue 2
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From: Alexander I. <ivl...@gm...> - 2008-05-27 21:32:15
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Hi Allen, Thank you for the notice. I am interested in the new things you develop and the QC assessments can be a useful addition. The perspective to increase the rate of downloading is also a good thing (currently I am downloading at a rate of ~1000 samples a day). I am familiar with Perl and R. It would be interesting to obtain some of the QC-checked data. Is it possible to learn which of the samples are "bad" without downloading the measurements themselves? Thanks, Alexander On Tue, May 27, 2008 at 11:07 PM, <cel...@li...> wrote: > Send Celsius-users mailing list submissions to > cel...@li... > > To subscribe or unsubscribe via the World Wide Web, visit > https://lists.sourceforge.net/lists/listinfo/celsius-users > or, via email, send a message with subject or body 'help' to > cel...@li... > > You can reach the person managing the list at > cel...@li... > > When replying, please edit your Subject line so it is more specific > than "Re: Contents of Celsius-users digest..." > > > Today's Topics: > > 1. Celsius data snapshots (Allen Day) > > > ---------------------------------------------------------------------- > > Message: 1 > Date: Tue, 27 May 2008 11:52:31 -0700 > From: "Allen Day" <all...@gm...> > Subject: [Celsius-users] Celsius data snapshots > To: "Alexander Ivliev" <ivl...@gm...> > Cc: cel...@li... > Message-ID: > <5c2...@ma...> > Content-Type: text/plain; charset=ISO-8859-1 > > Hi Alexander, > > I noticed you were downloading a lot of data last week. Not sure if > this is too late for your current round of downloading, but we've just > put up a first Celsius data snapshot. Basically, we take the RMA > processed data for all arrays, and store them into binary files, one > per arraydesign. The binary files are indexed. After that, we apply > some QC methods to remove what look like "bad" arrays. > > Then, you can retrieve data from these files using the indexes. I > have written some simple R and Perl code to do this. It can operate > on a local file, or can read from the binary files over HTTP. It's > quite fast -- even accessing the binary files over HTTP is much faster > than querying the current DAS/2 server. > > Bret, what is the URL to these data? > > -Allen > > > On 5/13/08, Alexander Ivliev <ivl...@gm...> wrote: >> Hi Allen, >> >> Thanks. I will indeed register and subscribe to the mailing list when >> the web-site is online again. >> >> Best regards, >> >> Alexander >> >> >> On Wed, May 14, 2008 at 2:02 AM, Allen Day <all...@gm...> wrote: >> > Hi Alexander, >> > >> > I think the database may be offline for maintenance. Bret (cced here) >> > can tell you more. I suggest that you subscribe to the celsius-users >> > mailing list (also cced here) to receive notifications of outages in >> > the future. >> > >> > Best, >> > Allen >> > >> > >> > >> > On Tue, May 13, 2008 at 2:38 PM, Alexander Ivliev >> > <ivl...@gm...> wrote: >> > > Hi Allen, >> > > >> > > I am using your Celsius database and find it very helpful. Currently >> > > it seems that the samples' annotations are unavailable through the >> > > web-site (for example, for SN:1000082, SN:1005549 and others). The >> > > problem persists for a few days. I am writing to make sure you are >> > > aware of the problem. Is it a temporary one? >> > > >> > > Best regards, >> > > Alexander Ivliev >> > > 5th year student, >> > > Moscow State University, Russia >> > > >> > >> > >> > >> > -- >> > allenday.skype >> > +1 (415) 335-4654 (office) >> > +1 (310) 804-5304 (mobile) >> > +1 (515) 474-9337 (fax) >> > >> > > > -- > allenday.skype > +1 (415) 335-4654 (office) > +1 (310) 804-5304 (mobile) > +1 (515) 474-9337 (fax) > > > > ------------------------------ > > ------------------------------------------------------------------------- > This SF.net email is sponsored by: Microsoft > Defy all challenges. Microsoft(R) Visual Studio 2008. > http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ > > ------------------------------ > > _______________________________________________ > Celsius-users mailing list > Cel...@li... > https://lists.sourceforge.net/lists/listinfo/celsius-users > > > End of Celsius-users Digest, Vol 4, Issue 2 > ******************************************* > |
