Recent changes to survival

survival modified by Keith Ching

Keith Ching — Fri, 11 Dec 2015 18:33:55 -0000

--- v6
+++ v7
@@ -2,6 +2,7 @@

 [survival] : Plot survival plots (TCGA only)

+[YouTube demo](https://www.youtube.com/watch?v=ecl1vyruAQ0&feature=youtu.be)
 Example:  Is the expression level of EGFR associated with survival in TCGA-LUAD?

 Choose Survival. Select TCGA-LUAD-RSEM expression set. Select TCGA-LUAD metadata source. Enter EGFR into hugo box. Press SUBMIT.  ( If you do not enter a gene symbol, ALL genes will be tested and a ranked list of genes will be returned.  This query will be slow. )

survival modified by Keith Ching

Keith Ching — Fri, 11 Dec 2015 17:55:07 -0000

--- v5
+++ v6
@@ -7,4 +7,4 @@
 Choose Survival. Select TCGA-LUAD-RSEM expression set. Select TCGA-LUAD metadata source. Enter EGFR into hugo box. Press SUBMIT.  ( If you do not enter a gene symbol, ALL genes will be tested and a ranked list of genes will be returned.  This query will be slow. )

 [[img src=survival_EGFR.png width=700px alt=egfr]]
-For stratified KM, the first and third quartiles of expression are used.
+For stratified KM, the first and last quartiles of expression are used.

survival modified by Keith Ching

Keith Ching — Thu, 12 Nov 2015 18:19:32 -0000

--- v4
+++ v5
@@ -1,9 +1,6 @@
 [Instructions]

 [survival] : Plot survival plots (TCGA only)
-
-
-Bug Alert: If you plot the survival of multiple genes, only the first gene is correct. Subsequent genes do not use the correct thresholds.  These errors have been corrected in the development version, but not yet in the current released version being used on the site.  As a work around, please only query one gene at a time.

 Example:  Is the expression level of EGFR associated with survival in TCGA-LUAD?

survival modified by Keith Ching

Keith Ching — Thu, 18 Jun 2015 19:03:43 -0000

--- v3
+++ v4
@@ -7,7 +7,7 @@

 Example:  Is the expression level of EGFR associated with survival in TCGA-LUAD?

-Choose Survival. Select TCGA-LUAD-RSEM expression set. Select TCGA-LUAD metadata source. Enter EGFR into hugo box. Press SUBMIT.
+Choose Survival. Select TCGA-LUAD-RSEM expression set. Select TCGA-LUAD metadata source. Enter EGFR into hugo box. Press SUBMIT.  ( If you do not enter a gene symbol, ALL genes will be tested and a ranked list of genes will be returned.  This query will be slow. )

 [[img src=survival_EGFR.png width=700px alt=egfr]]
 For stratified KM, the first and third quartiles of expression are used.

survival modified by Keith Ching

Keith Ching — Thu, 18 Jun 2015 19:01:50 -0000

--- v2
+++ v3
@@ -5,5 +5,9 @@

 Bug Alert: If you plot the survival of multiple genes, only the first gene is correct. Subsequent genes do not use the correct thresholds.  These errors have been corrected in the development version, but not yet in the current released version being used on the site.  As a work around, please only query one gene at a time.

+Example:  Is the expression level of EGFR associated with survival in TCGA-LUAD?
+
+Choose Survival. Select TCGA-LUAD-RSEM expression set. Select TCGA-LUAD metadata source. Enter EGFR into hugo box. Press SUBMIT.
+
 [[img src=survival_EGFR.png width=700px alt=egfr]]
-
+For stratified KM, the first and third quartiles of expression are used.

survival modified by Keith Ching

Keith Ching — Thu, 18 Jun 2015 19:00:00 -0000

--- v1
+++ v2
@@ -3,5 +3,7 @@
 [survival] : Plot survival plots (TCGA only)

-Bug Alert: If you plot the survival of multiple genes, only the first gene is correct. Subsequent genes do not use the correct thresholds.  These errors have been corrected in the development version, but not yet in the current released version being used on the site.
+Bug Alert: If you plot the survival of multiple genes, only the first gene is correct. Subsequent genes do not use the correct thresholds.  These errors have been corrected in the development version, but not yet in the current released version being used on the site.  As a work around, please only query one gene at a time.

+[[img src=survival_EGFR.png width=700px alt=egfr]]
+

survival modified by Keith Ching

Keith Ching — Thu, 18 Jun 2015 18:56:26 -0000

[Instructions]

[survival] : Plot survival plots (TCGA only)

Bug Alert: If you plot the survival of multiple genes, only the first gene is correct. Subsequent genes do not use the correct thresholds. These errors have been corrected in the development version, but not yet in the current released version being used on the site.