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sample_report

Keith Ching

Sample report returns a detailed list about a single sample.

TCGA slide viewer link.

Any Meta data stored about that sample.

CNV table of genes exceeding an absolute mean of 0.75
Can adjust the mean and minsnp cutoffs. Can be used to dump the segmentation table by gene symbol.

Mutation table by source.

TCGA example query

Cell line HCT116 example query


Related

Wiki: Instructions