expression_list

[Instructions]

expression_list is a way to obtain expression data in a table format. Two tables are output, one with the raw values as stored in the database, the other as median centered. This method is meant as a way to extract small amounts of data and create custom heatmaps. If you have > 100 genes, it would be more efficient to download the RData object. (links to RData objects are shown after doing an [expression_cor] search)

HUGO : space separated list of genes to obtain expression for. (required)
EXPRESSION : data source (required)
CNV/EXP plot : plot a heatmap (optional)
Metadata : add metadata color bar to heatmap (optional) (required CNV/EXP plot) The plot must be plotted once for metadata selections to appear. Then select a metadata feature and resubmit to re-render the plot with the colored metadata. Example with meta heatmap

Note: only categorical metadata with a limited number of unique values can be used for the color bar.

Example query

Dev: add stacked barplot if CNV/EXP plot is checked, limit 40 genes