RSEM-barplot

[Instructions]

RSEM-barplot : generates a barchart of expression values for all RSEM datasets with normal samples plotted separately. Example Also generates a strip chart and generates histograms for each dataset. Alternatively, it can generate expression vs. CNV plots for all RSEM datasets.

HUGO : enter a gene symbol to plot. (required) eg. kras
(optional) add a gene with -c to change the plot to a scatter plot of exp vs. cnv. eg. kras kras-c Example
(optional) if two gene symbols, the first will be used for the barplot and the second will be used to generate scatter plots for each dataset.

x-axis: expression level of KRAS. y-axis: log2 CNV of KRAS (red >=1 )

Plot the mutation load across TCGA datasets. Enter 'MUT-COUNT' as the HUGO symbol. Example

Plotting Meta values
Plot numeric meta-data values across categorical meta values. Enter 'META-NNNN' as the HUGO symbol for the numerical meta value where NNNN is the primary key listed in the meta-pull down menu. Additionally, a categorical metavalue must be defined to assign the meta-values to groups to plot. The final HUGO entry will look like META-NNNN META-MMMM where MMMM is the primary key of the categorical metavalue. To find meta value ids, see [meta_search]

Boxpot of meta value by categorical dataset meta value
Example

Boxplot of meta value by categorical subtype meta value.
Example