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CELLX Wiki

Description
CELLX is an informatics infrastructure to manage multi-dimensional genomics datasets containing expression, copy number variation, mutation, and compound sensitivity information. A browser based web page enables an accessible way to visualize, analyze, and download the database data in a pre-formatted table suitable for offline computation. CELLX is presently focused on supporting oncology precision medicine through the evaluation of preconceived hypotheses as well as unbiased, data driven hypothesis generation. Though usable by the general user, CELLX is aimed at the computational biologist who desires more control over the data or wants to integrate custom data not available in public databases.

CELLX was presented at the Pacific Symposium on Biocomputing, January 4-8, 2015, The Big Island of Hawaii. The slides for the presentation can be downloaded here. The paper can be downloaded from PSB or World Scientific.

Please use the following citation when referencing CELLX.

Cell index database (cellx): a web tool for cancer precision medicine.
Ching KA, Wang K, Kan Z, Fernandez J, Zhong W, Kostrowicki J, Xie T, Zhu Z, Martini JF, Koehler M, Arndt K, Rejto P.
Pac Symp Biocomput. 2015;20:10-9. PMID:25592564

[Instructions]
[Installation]
[Tutorials]
[Data loading]
[Troubleshooting]
[Datasets]
[Resources]
[Version History]
[Documentation]
[Metadata]

CELLX demo site

Project Members:

• Keith Ching (admin)