This patch adds the new SMSD code. I've gone though changes since the old code and added those which weren't already corrected in the main SMSD code. Unfortunately the only way I found was to remove the whole tree then reimport SMSD.
- fixed a couple of issues which you can see in final few commits
- several test failures that Asad is working on
- ~70 javadoc errors to fix - should be quite easy
Managed to import the SMSD history so there's about ~300 commits. Really can't check all of these :(. Not ideal but I think it's the best we can do.
Long term solution would defiantly be to abstract over the functionality. Having interfaces for isomorphism/subgraph isomorphism and MCS is a must. I'll bring this up in the next hangout.
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