Lots of shuffling to allow production/test modules to be collapsed when moving to maven. So far all modules except, interfaces, core, standard, valency-check, extra and atomtype can not be merged into a single module. It might be possible to merge interfaces but the others are very tightly coupled. This patch simply reorganises and modifies the code in the current structure.
Most of the work was in working out where the weak points were (i.e. a single unit test requiring dependence on a whole module). Tests were either moved to a better module or altered so as to not depend on other parts (a 'unit' test).
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