[Cdk-devel] M END problem with pseudoAtom

[<nic...@sy...>]

Hi,
	I have the following problem (I use first the following method:
atomContainer.setAtomAt(pos,pseudoAtom); and then I create a MDL file); when
I try to generate MDL file from an atomContainer on which I've added a
pseudoAtom, the resulting file doesn't have the final line "M  END". I've
also try to do this with an other atom added, and the problem was solved. so
I think it's the pseudoAtom which brings this problem.

//------------------------------------------------------
// without pseudoAtom:
//------------------------------------------------------

  CDK

  3  2  0  0  0  0  0  0  0  0999 V2000
    0.0000    0.0000    0.0000 R   0  0  0  0  0  0  0  0  0  0  0  0
    1.2990   -0.7500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5981   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0  0  0  0 
  3  2  1  0  0  0  0 
//------------------------------------------------------
// with pseudoAtom:
//------------------------------------------------------

  CDK

  3  2  0  0  0  0  0  0  0  0999 V2000
    0.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2990   -0.7500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5981   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0  0  0  0 
  3  2  1  0  0  0  0 
M  END
//------------------------------------------------------

thanks,
nico