[Cdk-commits] SF.net SVN: cdk:[14650] jchempaint/trunk/META-INF

SourceForge Headquarters 225 Broadway Suite 1600 San Diego, CA 92101 +1 (858) 454-5900

Revision: 14650
          http://cdk.svn.sourceforge.net/cdk/?rev=14650&view=rev
Author:   shk3
Date:     2009-07-02 13:57:30 +0000 (Thu, 02 Jul 2009)

Log Message:
-----------
updated the class lists

Modified Paths:
--------------
    jchempaint/trunk/META-INF/applet-core.files
    jchempaint/trunk/META-INF/applet-editor.files

Modified: jchempaint/trunk/META-INF/applet-core.files
===================================================================

--- jchempaint/trunk/META-INF/applet-core.files	2009-07-02 13:48:15 UTC (rev 14649)
+++ jchempaint/trunk/META-INF/applet-core.files	2009-07-02 13:57:30 UTC (rev 14650)
@@ -54,42 +54,69 @@
 org/_3pq/jgrapht/traverse/CrossComponentIterator$UndirectedSpecifics.class
 org/_3pq/jgrapht/traverse/GraphIterator.class
 org/_3pq/jgrapht/UndirectedGraph.class
+org/apache/commons/cli/CommandLineParser.class
+org/apache/commons/cli/ParseException.class
+org/apache/commons/cli/Parser.class
+org/apache/commons/cli/PosixParser.class
+org/apache/commons/cli/UnrecognizedOptionException.class
 org/openscience/cdk/Atom.class
 org/openscience/cdk/AtomContainer$1.class
 org/openscience/cdk/AtomContainer$2.class
+org/openscience/cdk/AtomContainer$3.class
+org/openscience/cdk/AtomContainer$4.class
 org/openscience/cdk/AtomContainer$5.class
 org/openscience/cdk/AtomContainer$AtomIterator.class
 org/openscience/cdk/AtomContainer$BondIterator.class
 org/openscience/cdk/AtomContainer.class
 org/openscience/cdk/AtomContainer$ElectronContainerIterator.class
+org/openscience/cdk/AtomContainer$LonePairIterator.class
 org/openscience/cdk/AtomContainerSet$1.class
 org/openscience/cdk/AtomContainerSet$AtomContainerIterator.class
 org/openscience/cdk/AtomContainerSet.class
+org/openscience/cdk/AtomContainer$SingleElectronIterator.class
+org/openscience/cdk/atomtype/CDKAtomTypeMatcher.class
 org/openscience/cdk/AtomType.class
+org/openscience/cdk/atomtype/IAtomTypeMatcher.class
+org/openscience/cdk/Bond$1.class
+org/openscience/cdk/Bond$AtomsIterator.class
 org/openscience/cdk/Bond.class
 org/openscience/cdk/CDKConstants.class
 org/openscience/cdk/ChemModel.class
 org/openscience/cdk/ChemObject.class
+org/openscience/cdk/config/AtomTypeFactory.class
+org/openscience/cdk/config/atomtypes/OWLAtomTypeHandler.class
+org/openscience/cdk/config/atomtypes/OWLAtomTypeReader.class
+org/openscience/cdk/config/IAtomTypeConfigurator.class
 org/openscience/cdk/config/IsotopeFactory.class
 org/openscience/cdk/config/isotopes/IsotopeHandler.class
 org/openscience/cdk/config/isotopes/IsotopeReader.class
+org/openscience/cdk/config/OWLBasedAtomTypeConfigurator.class
 org/openscience/cdk/controller/ControllerHub.class
 org/openscience/cdk/controller/ControllerModel.class
 org/openscience/cdk/controller/ControllerModuleAdapter.class
 org/openscience/cdk/controller/ControllerParameters.class
 org/openscience/cdk/controller/HighlightModule.class
+org/openscience/cdk/controller/IChemModelEventRelayHandler.class
 org/openscience/cdk/controller/IChemModelRelay.class
 org/openscience/cdk/controller/IControllerModel.class
 org/openscience/cdk/controller/IControllerModule.class
 org/openscience/cdk/controller/IMouseEventRelay.class
 org/openscience/cdk/controller/IViewEventRelay.class
+org/openscience/cdk/controller/PhantomBondGenerator.class
 org/openscience/cdk/controller/SwingMouseEventRelay.class
-org/openscience/cdk/controller/UndoAdapter.class
+org/openscience/cdk/controller/undoredo/IUndoListener.class
+org/openscience/cdk/controller/undoredo/IUndoRedoable.class
+org/openscience/cdk/controller/undoredo/IUndoRedoFactory.class
+org/openscience/cdk/controller/undoredo/UndoRedoHandler.class
+org/openscience/cdk/controller/ZoomModule.class
 org/openscience/cdk/DefaultChemObjectBuilder.class
 org/openscience/cdk/ElectronContainer.class
 org/openscience/cdk/Element.class
 org/openscience/cdk/event/ChemObjectChangeEvent.class
+org/openscience/cdk/event/ICDKChangeListener.class
 org/openscience/cdk/exception/CDKException.class
+org/openscience/cdk/exception/NoSuchAtomException.class
+org/openscience/cdk/exception/NoSuchAtomTypeException.class
 org/openscience/cdk/geometry/GeometryTools.class
 org/openscience/cdk/graph/BFSShortestPath.class
 org/openscience/cdk/graph/BFSShortestPath$MyBreadthFirstIterator.class
@@ -104,6 +131,7 @@
 org/openscience/cdk/interfaces/IAtomContainerSet.class
 org/openscience/cdk/interfaces/IAtomParity.class
 org/openscience/cdk/interfaces/IAtomType.class
+org/openscience/cdk/interfaces/IAtomType$Hybridization.class
 org/openscience/cdk/interfaces/IBioPolymer.class
 org/openscience/cdk/interfaces/IBond.class
 org/openscience/cdk/interfaces/IBond$Order.class
@@ -139,6 +167,7 @@
 org/openscience/cdk/interfaces/IRingSet.class
 org/openscience/cdk/interfaces/ISingleElectron.class
 org/openscience/cdk/interfaces/IStrand.class
+org/openscience/cdk/io/CMLReader.class
 org/openscience/cdk/io/DefaultChemObjectReader.class
 org/openscience/cdk/io/formats/ABINITFormat.class
 org/openscience/cdk/io/formats/Aces2Format.class
@@ -247,10 +276,9 @@
 org/openscience/cdk/layout/RingPlacer.class
 org/openscience/cdk/Molecule.class
 org/openscience/cdk/MoleculeSet.class
-org/openscience/cdk/renderer/AbstractFontManager.class
-org/openscience/cdk/renderer/AWTFontManager.class
 org/openscience/cdk/renderer/color/CDK2DAtomColors.class
 org/openscience/cdk/renderer/color/IAtomColorer.class
+org/openscience/cdk/renderer/elements/ArrowElement.class
 org/openscience/cdk/renderer/elements/AtomSymbolElement.class
 org/openscience/cdk/renderer/elements/ElementGroup.class
 org/openscience/cdk/renderer/elements/IRenderingElement.class
@@ -260,26 +288,47 @@
 org/openscience/cdk/renderer/elements/PathElement.class
 org/openscience/cdk/renderer/elements/RectangleElement.class
 org/openscience/cdk/renderer/elements/TextElement.class
+org/openscience/cdk/renderer/elements/TextGroupElement$Child.class
+org/openscience/cdk/renderer/elements/TextGroupElement.class
+org/openscience/cdk/renderer/elements/TextGroupElement$Position.class
 org/openscience/cdk/renderer/elements/WedgeLineElement.class
+org/openscience/cdk/renderer/font/AbstractFontManager.class
+org/openscience/cdk/renderer/font/AWTFontManager.class
+org/openscience/cdk/renderer/font/IFontManager.class
+org/openscience/cdk/renderer/font/IFontManager$FontStyle.class
 org/openscience/cdk/renderer/generators/BasicAtomGenerator.class
 org/openscience/cdk/renderer/generators/BasicBondGenerator$1.class
 org/openscience/cdk/renderer/generators/BasicBondGenerator.class
-org/openscience/cdk/renderer/generators/HighlightGenerator.class
+org/openscience/cdk/renderer/generators/ExtendedAtomGenerator.class
+org/openscience/cdk/renderer/generators/ExternalHighlightGenerator.class
+org/openscience/cdk/renderer/generators/HighlightAtomGenerator.class
+org/openscience/cdk/renderer/generators/HighlightBondGenerator.class
 org/openscience/cdk/renderer/generators/IGenerator.class
+org/openscience/cdk/renderer/generators/IReactionGenerator.class
+org/openscience/cdk/renderer/generators/LonePairGenerator.class
+org/openscience/cdk/renderer/generators/MappingGenerator.class
+org/openscience/cdk/renderer/generators/MergeAtomsGenerator.class
+org/openscience/cdk/renderer/generators/ProductsBoxGenerator.class
+org/openscience/cdk/renderer/generators/RadicalGenerator.class
+org/openscience/cdk/renderer/generators/ReactantsBoxGenerator.class
+org/openscience/cdk/renderer/generators/ReactionArrowGenerator.class
+org/openscience/cdk/renderer/generators/ReactionBoxGenerator.class
+org/openscience/cdk/renderer/generators/ReactionPlusGenerator.class
 org/openscience/cdk/renderer/generators/RingGenerator.class
-org/openscience/cdk/renderer/generators/SelectionGenerator$1.class
-org/openscience/cdk/renderer/generators/SelectionGenerator.class
-org/openscience/cdk/renderer/IJava2DRenderer.class
-org/openscience/cdk/renderer/IntermediateRenderer.class
-org/openscience/cdk/renderer/ISelection.class
-org/openscience/cdk/renderer/ISimpleRenderer2D.class
+org/openscience/cdk/renderer/generators/SelectAtomGenerator.class
+org/openscience/cdk/renderer/generators/SelectBondGenerator.class
+org/openscience/cdk/renderer/Renderer.class
 org/openscience/cdk/renderer/RendererModel.class
+org/openscience/cdk/renderer/RenderingParameters$AtomShape.class
 org/openscience/cdk/renderer/RenderingParameters.class
-org/openscience/cdk/renderer/RenderingParameters$SelectionShape.class
+org/openscience/cdk/renderer/selection/IChemObjectSelection.class
+org/openscience/cdk/renderer/selection/IncrementalSelection.class
 org/openscience/cdk/renderer/selection/LassoSelection.class
 org/openscience/cdk/renderer/selection/ShapeSelection.class
-org/openscience/cdk/renderer/visitor/AbstractAWTRenderingVisitor.class
-org/openscience/cdk/renderer/visitor/TransformingDrawVisitor.class
+org/openscience/cdk/renderer/visitor/AbstractAWTDrawVisitor.class
+org/openscience/cdk/renderer/visitor/AWTDrawVisitor$1.class
+org/openscience/cdk/renderer/visitor/AWTDrawVisitor.class
+org/openscience/cdk/renderer/visitor/IDrawVisitor.class
 org/openscience/cdk/Ring.class
 org/openscience/cdk/ringsearch/cyclebasis/CycleBasis.class
 org/openscience/cdk/ringsearch/cyclebasis/SimpleCycleBasis$AuxiliaryGraph.class
@@ -288,6 +337,7 @@
 org/openscience/cdk/ringsearch/SSSRFinder.class
 org/openscience/cdk/RingSet.class
 org/openscience/cdk/smiles/SmilesParser.class
+org/openscience/cdk/tools/CDKHydrogenAdder.class
 org/openscience/cdk/tools/LoggingTool.class
 org/openscience/cdk/tools/manipulator/AtomContainerSetManipulator.class
 org/openscience/cdk/tools/manipulator/ChemModelManipulator.class
@@ -298,7 +348,10 @@
 org/openscience/jchempaint/applet/JChemPaintAbstractApplet$1.class
 org/openscience/jchempaint/applet/JChemPaintAbstractApplet.class
 org/openscience/jchempaint/applet/JChemPaintViewerApplet.class
+org/openscience/jchempaint/application/JChemPaint.class
+org/openscience/jchempaint/JChemPaintPanel.class
 org/openscience/jchempaint/JChemPaintViewerPanel.class
+org/openscience/jchempaint/JCPPropertyHandler.class
 org/openscience/jchempaint/JExternalFrame.class
-io-formats.set
 org/openscience/jchempaint/RenderPanel.class
+org/openscience/jchempaint/undoredo/SwingUndoRedoFactory.class

Modified: jchempaint/trunk/META-INF/applet-editor.files
===================================================================
--- jchempaint/trunk/META-INF/applet-editor.files	2009-07-02 13:48:15 UTC (rev 14649)
+++ jchempaint/trunk/META-INF/applet-editor.files	2009-07-02 13:57:30 UTC (rev 14650)
@@ -54,40 +54,66 @@
 org/_3pq/jgrapht/traverse/CrossComponentIterator$UndirectedSpecifics.class
 org/_3pq/jgrapht/traverse/GraphIterator.class
 org/_3pq/jgrapht/UndirectedGraph.class
+org/apache/commons/cli/CommandLineParser.class
+org/apache/commons/cli/ParseException.class
+org/apache/commons/cli/Parser.class
+org/apache/commons/cli/PosixParser.class
+org/apache/commons/cli/UnrecognizedOptionException.class
 org/openscience/cdk/Atom.class
 org/openscience/cdk/AtomContainer$1.class
 org/openscience/cdk/AtomContainer$2.class
+org/openscience/cdk/AtomContainer$3.class
+org/openscience/cdk/AtomContainer$4.class
 org/openscience/cdk/AtomContainer$5.class
 org/openscience/cdk/AtomContainer$AtomIterator.class
 org/openscience/cdk/AtomContainer$BondIterator.class
 org/openscience/cdk/AtomContainer.class
 org/openscience/cdk/AtomContainer$ElectronContainerIterator.class
+org/openscience/cdk/AtomContainer$LonePairIterator.class
 org/openscience/cdk/AtomContainerSet$1.class
 org/openscience/cdk/AtomContainerSet$AtomContainerIterator.class
 org/openscience/cdk/AtomContainerSet.class
+org/openscience/cdk/AtomContainer$SingleElectronIterator.class
+org/openscience/cdk/atomtype/CDKAtomTypeMatcher.class
 org/openscience/cdk/AtomType.class
+org/openscience/cdk/atomtype/IAtomTypeMatcher.class
+org/openscience/cdk/Bond$1.class
+org/openscience/cdk/Bond$AtomsIterator.class
 org/openscience/cdk/Bond.class
 org/openscience/cdk/CDKConstants.class
 org/openscience/cdk/ChemModel.class
 org/openscience/cdk/ChemObject.class
+org/openscience/cdk/config/AtomTypeFactory.class
+org/openscience/cdk/config/atomtypes/OWLAtomTypeHandler.class
+org/openscience/cdk/config/atomtypes/OWLAtomTypeReader.class
+org/openscience/cdk/config/IAtomTypeConfigurator.class
 org/openscience/cdk/config/IsotopeFactory.class
 org/openscience/cdk/config/isotopes/IsotopeHandler.class
 org/openscience/cdk/config/isotopes/IsotopeReader.class
-org/openscience/cdk/controller/AddAtomModule.class
-org/openscience/cdk/controller/AddBondModule.class
+org/openscience/cdk/config/OWLBasedAtomTypeConfigurator.class
+org/openscience/cdk/controller/AddBondDragModule.class
 org/openscience/cdk/controller/AddRingModule.class
 org/openscience/cdk/controller/ControllerHub.class
 org/openscience/cdk/controller/ControllerModel.class
 org/openscience/cdk/controller/ControllerModuleAdapter.class
 org/openscience/cdk/controller/ControllerParameters.class
 org/openscience/cdk/controller/HighlightModule.class
+org/openscience/cdk/controller/IChemModelEventRelayHandler.class
 org/openscience/cdk/controller/IChemModelRelay.class
 org/openscience/cdk/controller/IControllerModel.class
 org/openscience/cdk/controller/IControllerModule.class
 org/openscience/cdk/controller/IMouseEventRelay.class
 org/openscience/cdk/controller/IViewEventRelay.class
+org/openscience/cdk/controller/PhantomBondGenerator.class
+org/openscience/cdk/controller/RemoveModule.class
 org/openscience/cdk/controller/SwingMouseEventRelay.class
-org/openscience/cdk/controller/UndoAdapter.class
+org/openscience/cdk/controller/undoredo/AddAtomsAndBondsEdit.class
+org/openscience/cdk/controller/undoredo/IUndoListener.class
+org/openscience/cdk/controller/undoredo/IUndoRedoable.class
+org/openscience/cdk/controller/undoredo/IUndoRedoFactory.class
+org/openscience/cdk/controller/undoredo/RemoveAtomsAndBondsEdit.class
+org/openscience/cdk/controller/undoredo/UndoRedoHandler.class
+org/openscience/cdk/controller/ZoomModule.class
 org/openscience/cdk/DefaultChemObjectBuilder.class
 org/openscience/cdk/ElectronContainer.class
 org/openscience/cdk/Element.class
@@ -95,6 +121,8 @@
 org/openscience/cdk/event/ICDKChangeListener.class
 org/openscience/cdk/exception/CDKException.class
 org/openscience/cdk/exception/InvalidSmilesException.class
+org/openscience/cdk/exception/NoSuchAtomException.class
+org/openscience/cdk/exception/NoSuchAtomTypeException.class
 org/openscience/cdk/geometry/GeometryTools.class
 org/openscience/cdk/graph/BFSShortestPath.class
 org/openscience/cdk/graph/BFSShortestPath$MyBreadthFirstIterator.class
@@ -110,6 +138,7 @@
 org/openscience/cdk/interfaces/IAtomContainerSet.class
 org/openscience/cdk/interfaces/IAtomParity.class
 org/openscience/cdk/interfaces/IAtomType.class
+org/openscience/cdk/interfaces/IAtomType$Hybridization.class
 org/openscience/cdk/interfaces/IBioPolymer.class
 org/openscience/cdk/interfaces/IBond.class
 org/openscience/cdk/interfaces/IBond$Order.class
@@ -145,6 +174,7 @@
 org/openscience/cdk/interfaces/IRingSet.class
 org/openscience/cdk/interfaces/ISingleElectron.class
 org/openscience/cdk/interfaces/IStrand.class
+org/openscience/cdk/io/CMLReader.class
 org/openscience/cdk/io/DefaultChemObjectReader.class
 org/openscience/cdk/io/formats/ABINITFormat.class
 org/openscience/cdk/io/formats/Aces2Format.class
@@ -242,7 +272,9 @@
 org/openscience/cdk/io/IChemObjectIO.class
 org/openscience/cdk/io/IChemObjectReader.class
 org/openscience/cdk/io/IChemObjectReader$Mode.class
+org/openscience/cdk/io/IChemObjectWriter.class
 org/openscience/cdk/io/ISimpleChemObjectReader.class
+org/openscience/cdk/io/listener/IChemObjectIOListener.class
 org/openscience/cdk/io/MDLV2000Reader.class
 org/openscience/cdk/io/ReaderFactory.class
 org/openscience/cdk/io/setting/BooleanIOSetting.class
@@ -253,10 +285,11 @@
 org/openscience/cdk/layout/RingPlacer.class
 org/openscience/cdk/Molecule.class
 org/openscience/cdk/MoleculeSet.class
-org/openscience/cdk/renderer/AbstractFontManager.class
-org/openscience/cdk/renderer/AWTFontManager.class
+org/openscience/cdk/PseudoAtom.class
+org/openscience/cdk/Reaction.class
 org/openscience/cdk/renderer/color/CDK2DAtomColors.class
 org/openscience/cdk/renderer/color/IAtomColorer.class
+org/openscience/cdk/renderer/elements/ArrowElement.class
 org/openscience/cdk/renderer/elements/AtomSymbolElement.class
 org/openscience/cdk/renderer/elements/ElementGroup.class
 org/openscience/cdk/renderer/elements/IRenderingElement.class
@@ -266,26 +299,52 @@
 org/openscience/cdk/renderer/elements/PathElement.class
 org/openscience/cdk/renderer/elements/RectangleElement.class
 org/openscience/cdk/renderer/elements/TextElement.class
+org/openscience/cdk/renderer/elements/TextGroupElement$Child.class
+org/openscience/cdk/renderer/elements/TextGroupElement.class
+org/openscience/cdk/renderer/elements/TextGroupElement$Position.class
 org/openscience/cdk/renderer/elements/WedgeLineElement.class
+org/openscience/cdk/renderer/font/AbstractFontManager.class
+org/openscience/cdk/renderer/font/AWTFontManager.class
+org/openscience/cdk/renderer/font/IFontManager.class
+org/openscience/cdk/renderer/font/IFontManager$FontStyle.class
 org/openscience/cdk/renderer/generators/BasicAtomGenerator.class
 org/openscience/cdk/renderer/generators/BasicBondGenerator$1.class
 org/openscience/cdk/renderer/generators/BasicBondGenerator.class
-org/openscience/cdk/renderer/generators/HighlightGenerator.class
+org/openscience/cdk/renderer/generators/ExtendedAtomGenerator.class
+org/openscience/cdk/renderer/generators/ExternalHighlightGenerator.class
+org/openscience/cdk/renderer/generators/HighlightAtomGenerator.class
+org/openscience/cdk/renderer/generators/HighlightBondGenerator.class
 org/openscience/cdk/renderer/generators/IGenerator.class
+org/openscience/cdk/renderer/generators/IReactionGenerator.class
+org/openscience/cdk/renderer/generators/LonePairGenerator.class
+org/openscience/cdk/renderer/generators/MappingGenerator.class
+org/openscience/cdk/renderer/generators/MergeAtomsGenerator.class
+org/openscience/cdk/renderer/generators/ProductsBoxGenerator.class
+org/openscience/cdk/renderer/generators/RadicalGenerator.class
+org/openscience/cdk/renderer/generators/ReactantsBoxGenerator.class
+org/openscience/cdk/renderer/generators/ReactionArrowGenerator.class
+org/openscience/cdk/renderer/generators/ReactionBoxGenerator.class
+org/openscience/cdk/renderer/generators/ReactionPlusGenerator.class
 org/openscience/cdk/renderer/generators/RingGenerator.class
-org/openscience/cdk/renderer/generators/SelectionGenerator$1.class
-org/openscience/cdk/renderer/generators/SelectionGenerator.class
-org/openscience/cdk/renderer/IJava2DRenderer.class
-org/openscience/cdk/renderer/IntermediateRenderer.class
-org/openscience/cdk/renderer/ISelection.class
-org/openscience/cdk/renderer/ISimpleRenderer2D.class
+org/openscience/cdk/renderer/generators/SelectAtomGenerator$1.class
+org/openscience/cdk/renderer/generators/SelectAtomGenerator.class
+org/openscience/cdk/renderer/generators/SelectBondGenerator.class
+org/openscience/cdk/renderer/Renderer.class
 org/openscience/cdk/renderer/RendererModel.class
+org/openscience/cdk/renderer/RenderingParameters$AtomShape.class
 org/openscience/cdk/renderer/RenderingParameters.class
-org/openscience/cdk/renderer/RenderingParameters$SelectionShape.class
+org/openscience/cdk/renderer/selection/AbstractSelection$1.class
+org/openscience/cdk/renderer/selection/AbstractSelection.class
+org/openscience/cdk/renderer/selection/IChemObjectSelection.class
+org/openscience/cdk/renderer/selection/IncrementalSelection.class
 org/openscience/cdk/renderer/selection/LassoSelection.class
+org/openscience/cdk/renderer/selection/RectangleSelection.class
 org/openscience/cdk/renderer/selection/ShapeSelection.class
-org/openscience/cdk/renderer/visitor/AbstractAWTRenderingVisitor.class
-org/openscience/cdk/renderer/visitor/TransformingDrawVisitor.class
+org/openscience/cdk/renderer/selection/SingleSelection.class
+org/openscience/cdk/renderer/visitor/AbstractAWTDrawVisitor.class
+org/openscience/cdk/renderer/visitor/AWTDrawVisitor$1.class
+org/openscience/cdk/renderer/visitor/AWTDrawVisitor.class
+org/openscience/cdk/renderer/visitor/IDrawVisitor.class
 org/openscience/cdk/Ring.class
 org/openscience/cdk/ringsearch/cyclebasis/CycleBasis.class
 org/openscience/cdk/ringsearch/cyclebasis/SimpleCycleBasis$AuxiliaryGraph.class
@@ -294,35 +353,74 @@
 org/openscience/cdk/ringsearch/SSSRFinder.class
 org/openscience/cdk/RingSet.class
 org/openscience/cdk/smiles/SmilesParser.class
+org/openscience/cdk/tools/CDKHydrogenAdder.class
 org/openscience/cdk/tools/LoggingTool.class
+org/openscience/cdk/tools/manipulator/AtomContainerManipulator.class
 org/openscience/cdk/tools/manipulator/AtomContainerSetManipulator.class
 org/openscience/cdk/tools/manipulator/ChemModelManipulator.class
 org/openscience/cdk/tools/manipulator/MoleculeSetManipulator.class
 org/openscience/cdk/tools/manipulator/RingSetManipulator.class
-org/openscience/cdk/tools/manipulator/MolecularFormulaManipulator.class
 org/openscience/cdk/validate/IValidator.class
 org/openscience/cdk/validate/ProblemMarker.class
 org/openscience/jchempaint/AbstractJChemPaintPanel.class
+org/openscience/jchempaint/action/AboutAction.class
+org/openscience/jchempaint/action/AddHydrogenAction.class
+org/openscience/jchempaint/action/AdjustBondOrdersAction.class
+org/openscience/jchempaint/action/ChangeAtomSymbolAction.class
+org/openscience/jchempaint/action/ChangeIsotopeAction.class
 org/openscience/jchempaint/action/ChangeModeAction.class
 org/openscience/jchempaint/action/CleanupAction.class
+org/openscience/jchempaint/action/CloseAction.class
+org/openscience/jchempaint/action/ConvertToPseudoAtomAction.class
+org/openscience/jchempaint/action/ConvertToRadicalAction.class
 org/openscience/jchempaint/action/CopyPasteAction.class
+org/openscience/jchempaint/action/CopyPasteAction$JcpSelection.class
 org/openscience/jchempaint/action/CreateInChIAction.class
+org/openscience/jchempaint/action/CreateReactionAction.class
 org/openscience/jchempaint/action/CreateSmilesAction.class
-org/openscience/jchempaint/action/EditAction.class
+org/openscience/jchempaint/action/EditAtomContainerPropsAction.class
+org/openscience/jchempaint/action/EditChemObjectPropsAction.class
+org/openscience/jchempaint/action/ExitAction.class
+org/openscience/jchempaint/action/ExportAction.class
+org/openscience/jchempaint/action/FlipAction.class
+org/openscience/jchempaint/action/HelpAction.class
 org/openscience/jchempaint/action/InsertStructureAction.class
 org/openscience/jchempaint/action/JCPAction.class
+org/openscience/jchempaint/action/LicenseAction.class
 org/openscience/jchempaint/action/MenuBarAction.class
 org/openscience/jchempaint/action/ModifyDisplaySettingsAction.class
+org/openscience/jchempaint/action/ModifyGeneralSettingsAction.class
 org/openscience/jchempaint/action/NewAction.class
+org/openscience/jchempaint/action/OpenAction.class
+org/openscience/jchempaint/action/PreferencesAction.class
+org/openscience/jchempaint/action/PrintAction.class
+org/openscience/jchempaint/action/RedoAction.class
+org/openscience/jchempaint/action/SaveAction.class
+org/openscience/jchempaint/action/SaveAsAction.class
 org/openscience/jchempaint/action/StatusBarAction.class
 org/openscience/jchempaint/action/ToolBarAction.class
+org/openscience/jchempaint/action/UndoAction.class
 org/openscience/jchempaint/action/ValidateAction.class
+org/openscience/jchempaint/action/ZoomAction.class
 org/openscience/jchempaint/applet/JChemPaintAbstractApplet.class
 org/openscience/jchempaint/applet/JChemPaintEditorApplet.class
+org/openscience/jchempaint/application/JChemPaint.class
+org/openscience/jchempaint/dialog/editor/AtomContainerEditor.class
+org/openscience/jchempaint/dialog/editor/AtomEditor.class
+org/openscience/jchempaint/dialog/editor/BondEditor.class
+org/openscience/jchempaint/dialog/editor/ChemObjectEditor.class
+org/openscience/jchempaint/dialog/editor/PseudoAtomEditor.class
+org/openscience/jchempaint/dialog/editor/ReactionEditor.class
+org/openscience/jchempaint/dialog/FieldTablePanel.class
+org/openscience/jchempaint/GT.class
+org/openscience/jchempaint/GT$Language.class
 org/openscience/jchempaint/InsertTextPanel.class
+org/openscience/jchempaint/io/JCPFileView.class
 org/openscience/jchempaint/JChemPaintMenuBar.class
+org/openscience/jchempaint/JChemPaintMenuHelper.class
 org/openscience/jchempaint/JChemPaintPanel.class
-org/openscience/jchempaint/JCPLocalizationHandler.class
+org/openscience/jchempaint/JChemPaintPopupMenu.class
+org/openscience/jchempaint/JCPMenuTextMaker.class
 org/openscience/jchempaint/JCPPropertyHandler.class
 org/openscience/jchempaint/JCPStatusBar.class
 org/openscience/jchempaint/JCPToolBar$1.class
@@ -330,3 +428,7 @@
 org/openscience/jchempaint/JExternalFrame.class
 org/openscience/jchempaint/RenderPanel.class
 org/openscience/jchempaint/StringHelper.class
+org/openscience/jchempaint/SwingPopupModule.class
+org/openscience/jchempaint/undoredo/SwingAddAtomsAndBondsEdit.class
+org/openscience/jchempaint/undoredo/SwingRemoveAtomsAndBondsEdit.class
+org/openscience/jchempaint/undoredo/SwingUndoRedoFactory.class


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