[Cdk-commits] CVS: cdk/src/org/openscience/cdk/geometry/alignment KabschAlignment.java,1.9,1.10

[Egon W. <eg...@us...>]

Update of /cvsroot/cdk/cdk/src/org/openscience/cdk/geometry/alignment
In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv13728/src/org/openscience/cdk/geometry/alignment

Modified Files:
	KabschAlignment.java 
Log Message:
More citation of the BO dict (and some JavaDoc style cleanup)

Index: KabschAlignment.java
===================================================================
RCS file: /cvsroot/cdk/cdk/src/org/openscience/cdk/geometry/alignment/KabschAlignment.java,v
retrieving revision 1.9
retrieving revision 1.10
diff -u -r1.9 -r1.10
--- KabschAlignment.java	31 Mar 2005 22:01:16 -0000	1.9
+++ KabschAlignment.java	21 Jun 2005 14:44:25 -0000	1.10
@@ -35,15 +35,15 @@
 /**
  * Aligns two structures to minimize the RMSD using the Kabsch algorithm.
  *
- * This class is an implementation of the Kabsch algorithm ({@cdk.cite KAB76}, {@cdk.cite KAB78})
+ * <p>This class is an implementation of the Kabsch algorithm ({@cdk.cite KAB76}, {@cdk.cite KAB78})
  * and evaluates the optimal rotation matrix (U) to minimize the RMSD between the two structures.
  * Since the algorithm assumes that the number of points are the same in the two structures
  * it is the job of the caller to pass the proper number of atoms from the two structures. Constructors
  * which take whole <code>AtomContainer</code>'s are provided but they should have the same number
  * of atoms.
  * The algorithm allows for the use of atom weightings and by default all points are given a weight of 1.0
- * <p>
- * Example usage can be:
+ *
+ * <p>Example usage can be:
  * <pre>
  * AtomContainer ac1, ac2;
  *
@@ -84,10 +84,11 @@
  * // display the two AtomContainer's
  *</pre>
  * 
- * @author Rajarshi Guha
- * @cdk.created 2004-12-11
+ * @author           Rajarshi Guha
+ * @cdk.created      2004-12-11
  * @cdk.builddepends Jama-1.0.1.jar
- * @cdk.depends Jama-1.0.1.jar
+ * @cdk.depends      Jama-1.0.1.jar
+ * @cdk.dictref      blue-obelisk:alignmentKabsch
  */ 
 public class KabschAlignment {