From: E.L. W. <e.w...@sc...> - 2004-08-19 07:06:57
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=2D----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 Daniel,=20 On Wednesday 18 August 2004 19:39, Daniel Leidert wrote: > * The follwing methods must be changed: = =20 > * * = =20 > * * getX2D() --> getX2d() = =20 > * * getY2D() --> getY2d() = =20 > * * = =20 > * * That's all. = =20 That's a bug... we still need to set up som build deamons, that build with= =20 certain JVM's and configurations (with/-out Java3d, JOELib)... Egon =2D --=20 e.w...@sc... PhD on Molecular Representation in Chemometrics Radboud University, Nijmegen http://www.cac.science.ru.nl/people/egonw/ GPG: 1024D/D6336BA6 "Again a chemist did something useful with a computer" =2D----BEGIN PGP SIGNATURE----- Version: GnuPG v1.0.7 (SunOS) iD8DBQFBJFF+d9R8I9Yza6YRAjgsAJ9Xygj+N44PH3yLQX04GHcwweIRVACfSTat oLAkNqERXptZgkzJdCqlN3U=3D =3D3neB =2D----END PGP SIGNATURE----- |
From: E.L. W. <eg...@us...> - 2004-08-19 11:21:27
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=2D----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 On Thursday 19 August 2004 11:47, Daniel Leidert wrote: > E.L. Willighagen wrote: > > On Thursday 19 August 2004 09:06, E.L. Willighagen wrote: > > > On Wednesday 18 August 2004 19:39, Daniel Leidert wrote: > > > > * The follwing methods must be changed: > > > > * * > > > > * * getX2D() --> getX2d() > > > > * * getY2D() --> getY2d() > > > > * * > > > > * * That's all. > > > > > > That's a bug... we still need to set up som build deamons, that build > > > with certain JVM's and configurations (with/-out Java3d, JOELib)... > > > > Huh? I thought I understood what was happening here... but... > > > > Daniel, where do those changes need to be made? > > In <joelib-source-20040729>/src/joelib/util/cdk/CDKTools.java (line > 83+84). This seems to be a bug in JOElib, not in the CDK-source (IMHO). > Yesterday, there was no time, to post the problem to the > JOElib-developers mailing list. Ah, ic...=20 > The compiler stops with an error, when you try to compile joelib.jar > with the cdk-*.jars (target: compile.cdk.parts, see joebuild.xml - the > second joelib-build-run in Makefile). He complains about the methods > getX2D() and getY2D(). So I think, the above changes have to be made, to > build joelib.jar with compiled-in cdk-parts (it is working then, but it > seems not to be necessary to compile joelib.jar with cdk-*.jar for > building cdk-libio.jar -> maybe, this can be an own package: > libcdk-java-joelib which will contain joelib.jar with compiled-in=20 > cdk-parts). Or a libjoelib-java package for joelib, and a libcdklibio-java for the=20 cdk-libio.jar? JOELib compiles also with Ant, so it should be fairly easy to start with th= e=20 debian files for CDK or JChemPaint... > BTW: I wanted to ask you, if we can remove several directories from > cvs/cdk/packages/debian/? In the next days/weeks, I will try to make a > cdk-package for the Shell-wrappers (and maybe one doc-package if > possible).=20 Cool. Then I can learn how to do that... As said, I've tried that for CDK, = but=20 did not have enough deb building experience... > So it should be possible, to delete libcdk/ and libcdkextra/=20 > and maybe cdk/ and cdk-doc/. Yes, go ahead. Was thinking about that too, but busy with non-CDK stuff dur= ing=20 the day (well, except for email :) Egon =2D --=20 eg...@us... =2D --------------------------------------- CDK: http://cdk.sf.net/ JChemPaint: http://jchempaint.sf.net/ Jmol: http://www.jmol.org/ =2D----BEGIN PGP SIGNATURE----- Version: GnuPG v1.0.7 (SunOS) iD8DBQFBJI0kd9R8I9Yza6YRAozyAKCQnMawLYeHPZ56b2uWdNJsjRh35wCgsY/a lqn8cpSaGukt0VBb2azhpr8=3D =3DYbgh =2D----END PGP SIGNATURE----- |
From: Daniel L. <dan...@gm...> - 2004-08-21 12:24:26
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Am Do, den 19.08.2004 schrieb E.L. Willighagen um 13:21: > On Thursday 19 August 2004 11:47, Daniel Leidert wrote: > > BTW: I wanted to ask you, if we can remove several directories from > > cvs/cdk/packages/debian/? In the next days/weeks, I will try to make a > > cdk-package for the Shell-wrappers (and maybe one doc-package if > > possible). > > Cool. Then I can learn how to do that... As said, I've tried that for CDK, but > did not have enough deb building experience... It's done. There are now 4 debian-packages: libcdk-java (cdk-libs) libcdk-java-common (cdk-common-libs) libcdk-java-doc (API-doc) cdk (shell wrappers) (I hope, if apt-listchanges is installed, it will show this information). A few words to the making of the API-doc: This could be done in future, by adding a javadoc-target to build.xml (my currently used way). There is also a debian-way to do this (adding dh_javadoc to debian/rules, an example was added to rules, but commented out), but gjdoc stops with an Exception (it seems to be a bug in gjdoc). > > So it should be possible, to delete libcdk/ and libcdkextra/ > > and maybe cdk/ and cdk-doc/. > > Yes, go ahead. Was thinking about that too, but busy with non-CDK stuff during > the day (well, except for email :) I will upload the files this weekend and then delete unneeded directories. Regards, Daniel -- |
From: E.L. W. <e.w...@sc...> - 2004-08-19 07:17:38
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=2D----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 On Thursday 19 August 2004 09:06, E.L. Willighagen wrote: > On Wednesday 18 August 2004 19:39, Daniel Leidert wrote: > > * The follwing methods must be changed: > > * * > > * * getX2D() --> getX2d() > > * * getY2D() --> getY2d() > > * * > > * * That's all. > > That's a bug... we still need to set up som build deamons, that build with > certain JVM's and configurations (with/-out Java3d, JOELib)... Huh? I thought I understood what was happening here... but... Daniel, where do those changes need to be made? I cannot find it in=20 Convertor.java... Egon =2D --=20 e.w...@sc... PhD on Molecular Representation in Chemometrics Radboud University, Nijmegen http://www.cac.science.ru.nl/people/egonw/ GPG: 1024D/D6336BA6 "Again a chemist did something useful with a computer" =2D----BEGIN PGP SIGNATURE----- Version: GnuPG v1.0.7 (SunOS) iD8DBQFBJFQKd9R8I9Yza6YRAuzZAJ43hx1G0KZOe3wt31+KWm3ErNK7JgCePAO9 U2wKwWFJdZ7luwMKw9qTyl4=3D =3DStwX =2D----END PGP SIGNATURE----- |
From: Daniel L. <dan...@gm...> - 2004-08-19 09:46:19
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xpost to joelib-devel mailing list E.L. Willighagen wrote: > On Thursday 19 August 2004 09:06, E.L. Willighagen wrote: > > On Wednesday 18 August 2004 19:39, Daniel Leidert wrote: > > > * The follwing methods must be changed: > > > * * > > > * * getX2D() --> getX2d() > > > * * getY2D() --> getY2d() > > > * * > > > * * That's all. > > > > That's a bug... we still need to set up som build deamons, that build with > > certain JVM's and configurations (with/-out Java3d, JOELib)... > > Huh? I thought I understood what was happening here... but... > > Daniel, where do those changes need to be made? In <joelib-source-20040729>/src/joelib/util/cdk/CDKTools.java (line 83+84). This seems to be a bug in JOElib, not in the CDK-source (IMHO). Yesterday, there was no time, to post the problem to the JOElib-developers mailing list. The compiler stops with an error, when you try to compile joelib.jar with the cdk-*.jars (target: compile.cdk.parts, see joebuild.xml - the second joelib-build-run in Makefile). He complains about the methods getX2D() and getY2D(). So I think, the above changes have to be made, to build joelib.jar with compiled-in cdk-parts (it is working then, but it seems not to be necessary to compile joelib.jar with cdk-*.jar for building cdk-libio.jar -> maybe, this can be an own package: libcdk-java-joelib, which will contain joelib.jar with compiled-in cdk-parts). BTW: I wanted to ask you, if we can remove several directories from cvs/cdk/packages/debian/? In the next days/weeks, I will try to make a cdk-package for the Shell-wrappers (and maybe one doc-package if possible). So it should be possible, to delete libcdk/ and libcdkextra/ and maybe cdk/ and cdk-doc/. Regards, Daniel -- |
Hi all, thanks guys. That's not a big effort. This will be checked in and part of the monthly new release. Kind regards, Joerg > xpost to joelib-devel mailing list > > E.L. Willighagen wrote: > >>On Thursday 19 August 2004 09:06, E.L. Willighagen wrote: >> >>>On Wednesday 18 August 2004 19:39, Daniel Leidert wrote: >>> >>>>* The follwing methods must be changed: >>>> * * >>>> * * getX2D() --> getX2d() >>>> * * getY2D() --> getY2d() >>>> * * >>>> * * That's all. >>> >>>That's a bug... we still need to set up som build deamons, that build with >>>certain JVM's and configurations (with/-out Java3d, JOELib)... >> >>Huh? I thought I understood what was happening here... but... >> >>Daniel, where do those changes need to be made? > > > In <joelib-source-20040729>/src/joelib/util/cdk/CDKTools.java (line > 83+84). This seems to be a bug in JOElib, not in the CDK-source (IMHO). > Yesterday, there was no time, to post the problem to the > JOElib-developers mailing list. > > The compiler stops with an error, when you try to compile joelib.jar > with the cdk-*.jars (target: compile.cdk.parts, see joebuild.xml - the > second joelib-build-run in Makefile). He complains about the methods > getX2D() and getY2D(). So I think, the above changes have to be made, to > build joelib.jar with compiled-in cdk-parts (it is working then, but it > seems not to be necessary to compile joelib.jar with cdk-*.jar for > building cdk-libio.jar -> maybe, this can be an own package: > libcdk-java-joelib, which will contain joelib.jar with compiled-in > cdk-parts). > > BTW: I wanted to ask you, if we can remove several directories from > cvs/cdk/packages/debian/? In the next days/weeks, I will try to make a > cdk-package for the Shell-wrappers (and maybe one doc-package if > possible). So it should be possible, to delete libcdk/ and libcdkextra/ > and maybe cdk/ and cdk-doc/. > > Regards, Daniel -- Dipl. Chem. Joerg K. Wegner Center of Bioinformatics Tuebingen (ZBIT) Department of Computer Architecture Univ. Tuebingen, Sand 1, D-72076 Tuebingen, Germany Phone: (+49/0) 7071 29 78970 Fax: (+49/0) 7071 29 5091 E-Mail: mailto:we...@in... WWW: http://www-ra.informatik.uni-tuebingen.de -- Never mistake motion for action. (E. Hemingway) Never mistake action for meaningful action. (Hugo Kubinyi,2004) |