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From: Egon Willighagen <egon.willighagen@gm...> - 2010-01-11 17:17:06
|
On Mon, Jan 11, 2010 at 2:24 PM, Stefan Kuhn <stefan.kuhn@...> wrote: > Yes, indeed. With respect to cmlxom, I was relying on Andrew's information and > didn't really realize the url, but we should have something better if we can > find it. Please file bug report for such situations... We should also put source code in our repository for project with licenses that require it... we now point to upstream, but it often happens that source code is no longer made available later for that particular version... But we're making progress... thanx for your patches! Egon -- Post-doc @ Uppsala University Homepage: http://egonw.github.com/ Blog: http://chem-bla-ics.blogspot.com/ PubList: http://www.citeulike.org/user/egonw/tag/papers |
|
From: Stefan Kuhn <stefan.kuhn@eb...> - 2010-01-11 13:24:42
|
On Monday 11 January 2010 11:11:08 Egon Willighagen wrote: > On Mon, Jan 11, 2010 at 10:37 AM, Egon Willighagen > > <egon.willighagen@...> wrote: > > diff --git a/jar/cmlxom-2.5-b1.jar.meta b/jar/cmlxom-2.5-b1.jar.meta > > -#LicenseURL= > > +#LicenseURL=http://www.opensource.org/licenses/artistic-license-2.0.php > > > > I had in mind of having a project specific URL here, that backs up the > > statement, instead of a URL about the license itself... so, a URL that > > claims that the code is AL2.0 on the CMLXOM website. Because that's > > the important bit of information... > > > > Your thoughts? > > Actually, all other patches seem to do it in the same way I had in > mind too, so we seem to be in agreement :) Yes, indeed. With respect to cmlxom, I was relying on Andrew's information and didn't really realize the url, but we should have something better if we can find it. Stefan > > Egon -- Stefan Kuhn B. Sc. M. A. Software Engineer in the Chemoinformatics and Metabolism Team European Bioinformatics Institute (EBI) Wellcome Trust Genome Campus Hinxton, Cambridge CB10 1SD UK Phone +44 1223 49 2657 Fax +44 (0)1223 494 468 |
|
From: Egon Willighagen <egon.willighagen@gm...> - 2010-01-11 11:11:36
|
On Mon, Jan 11, 2010 at 10:37 AM, Egon Willighagen <egon.willighagen@...> wrote: > diff --git a/jar/cmlxom-2.5-b1.jar.meta b/jar/cmlxom-2.5-b1.jar.meta > -#LicenseURL= > +#LicenseURL=http://www.opensource.org/licenses/artistic-license-2.0.php > > I had in mind of having a project specific URL here, that backs up the > statement, instead of a URL about the license itself... so, a URL that > claims that the code is AL2.0 on the CMLXOM website. Because that's > the important bit of information... > > Your thoughts? Actually, all other patches seem to do it in the same way I had in mind too, so we seem to be in agreement :) Egon -- Post-doc @ Uppsala University Homepage: http://egonw.github.com/ Blog: http://chem-bla-ics.blogspot.com/ PubList: http://www.citeulike.org/user/egonw/tag/papers |
|
From: Egon Willighagen <egon.willighagen@gm...> - 2010-01-11 10:49:33
|
On Thu, Jan 7, 2010 at 7:10 PM, Stefan Kuhn <stefan.kuhn@...> wrote:
> Still missing are proper meta files for javacc and jri. In both cases it's
> difficult to establish the version, the jri is a bit confusing overall. Also,
> the check for included packages needs to be done.
JRI is from rJava 0.5:
$ cd jar/
$ git log -- JRI.jar
commit 47b7a8813514d968ae78ed63c79f86b993611ccb
Author: egonw <egonw@...>
Date: Thu Mar 20 19:25:32 2008 +0000
Upgraded to rJava 0.5
git-svn-id:
https://cdk.svn.sourceforge.net/svnroot/cdk/cdk/trunk@...
eb4e18e3-b210-0410-a6ab-dec725e4b171
JavaCC seems quite some older...
$ git log -- javacc.jar
commit 1dd9647fd1a1c2250323ef7ecf7ce321727501af
Author: stomkinson <stomkinson@...>
Date: Sun Sep 14 15:14:48 2003 +0000
Added IUPAC name parser
git-svn-id:
https://cdk.svn.sourceforge.net/svnroot/cdk/trunk/cdk@...
eb4e18e3-b210-0410-a6ab-dec725e4b171
The jar file does not seem to have much useful info; the MANIFEST.MF looks like:
Manifest-Version: 1.0
Ant-Version: Apache Ant 1.5.3
Created-By: 1.4.1_03-b02 (Sun Microsystems Inc.)
and the rest are .class files...
Egon
--
Post-doc @ Uppsala University
Homepage: http://egonw.github.com/
Blog: http://chem-bla-ics.blogspot.com/
PubList: http://www.citeulike.org/user/egonw/tag/papers
|
|
From: Egon Willighagen <egon.willighagen@gm...> - 2010-01-11 09:38:26
|
Stefan, I'm running through your patches... On Tue, Jan 5, 2010 at 6:52 PM, Stefan Kuhn <stefan.kuhn@...> wrote: > Please find attached a number of new/modified license files. diff --git a/jar/cmlxom-2.5-b1.jar.meta b/jar/cmlxom-2.5-b1.jar.meta index 2ae5d6d..cf48e87 100644 --- a/jar/cmlxom-2.5-b1.jar.meta +++ b/jar/cmlxom-2.5-b1.jar.meta @@ -3,9 +3,9 @@ Library=CMLXOM Version=2.5 beta1 #Copyright= License=Artistic License 2.0 -#LicenseURL= +#LicenseURL=http://www.opensource.org/licenses/artistic-license-2.0.php I had in mind of having a project specific URL here, that backs up the statement, instead of a URL about the license itself... so, a URL that claims that the code is AL2.0 on the CMLXOM website. Because that's the important bit of information... Your thoughts? Egon -- Post-doc @ Uppsala University Homepage: http://egonw.github.com/ Blog: http://chem-bla-ics.blogspot.com/ PubList: http://www.citeulike.org/user/egonw/tag/papers |