Hi All,

We found the issue also propagates down to editors (e.g. JChemPaint). Iím going to deprecate the class and remove itís use in the SDG (but it will still exist if you which to resolve overlaps with this method). To demonstrate the issues of what it does Stephan has made a short video.

http://www.ebi.ac.uk/~johnmay/cdk/resolve-overlaps-bug.m4v
http://www.ebi.ac.uk/~johnmay/cdk/resolve-overlaps-bug.wmv

Cheers,
John