When a pdb-cml file is read and parsed to IPDBPolymer object and this object is agein parsed with the CMLWriter a pdb-cml file. The Atoms are not put in the same order into the file like the previous file.
Suggestion - move to request for enhancement, do the atoms need to be in the same order.
Suggestion - move to request for enhancement, do the atoms need to be in the same order.