After fixing the SMILES parser, I found a number of problems
with the HOSECodeGenerator. It seems that it is incorrectly using
the getHydrogenCount()... or maybe not. Need advice. For
testSphere1(), "C-2;=CC(//)" get no longer created in the test.
I've traced this down to line 230 in HOSECodeGenerator.java (v
1.24) where it adds the getHydrogenCount() for that atom, which
is the number of implicit hydrogens: two neighbors + 1 implicit H
is not 2, as in the above string.
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