Re: [CDAO-discuss] EDAM ontology

[Karen C. <kar...@gm...>]

Nice find, Rutger! I didn't know about this. I like the idea of a GSoC
project, and I think using ISA-tools is the way to go.

NESCent will be announcing this year's request for PhyloSoC ideas shortly.

On Thu, Feb 9, 2012 at 8:27 AM, Arlin Stoltzfus <ar...@um...> wrote:
> Is there a GSOC project here?  Take the MIAPA checklist:
>
>  http://wiki.tdwg.org/twiki/bin/view/Phylogenetics/MIAPADraft#Reconciled_draft_checklist
>
> plus some kind of ontology-aware forms interface-- can ISA-tools do this?--
>
>   http://isatab.sourceforge.net/
>
> and EDAM, and create a tool that can be used to satisfy a small set of
> test-cases. The test-cases would be phylogenetic reports (with some
> associated data files for tree, alignment, etc) that can be rendered as
> MIAPA reports, which is what we are aiming at here:
>
>   http://www.evoio.org/wiki/MIAPA/PhyloWays
>
> although this needs more work.
>
> Arlin
>
> On Feb 9, 2012, at 7:55 AM, Rutger Vos wrote:
>
> Hi all,
>
> just to bring this to your attention: the EDAM ontology is amazingly
> extensive, including terms for all the file formats we all love, tree
> annotation (for which the concept has been aligned
> with http://www.evolutionaryontology.org/cdao.owl#CDAOAnnotation, terms for
> reconstruction methods, etc. Maybe you knew all this, but I was quite amazed
> to see it: http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=EDAM
>
> Rutger
> --
> Dr. Rutger A. Vos
> Bioinformaticist
> NCB Naturalis
> Visiting address: Office A109, Einsteinweg 2, 2333 CC, Leiden, the
> Netherlands
> Mailing address: Postbus 9517, 2300 RA, Leiden, the Netherlands
> http://rutgervos.blogspot.com
>
> --
> You received this message because you are subscribed to the Google
> Groups "MIAPA" group.
> For more options, visit this group at
> http://groups.google.com/group/miapa-discuss?hl=en
>
>
> -------
> Arlin Stoltzfus (ar...@um...)
> Fellow, IBBR; Adj. Assoc. Prof., UMCP; Research Biologist, NIST
> IBBR, 9600 Gudelsky Drive, Rockville, MD
> tel: 240 314 6208; web: www.molevol.org
>
> --
> You received this message because you are subscribed to the Google
> Groups "MIAPA" group.
> For more options, visit this group at
> http://groups.google.com/group/miapa-discuss?hl=en



-- 
~~~~~~~~~~~~~~~~~~~~~~~
kar...@gm...
~~~~~~~~~~~~~~~~~~~~~~~