Re: [CDAO-discuss] CDAO-discuss Digest, Vol 4, Issue 2

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I'm sorry for not sending it out a day in advance as promised.  I  
didn't realize that some people might be getting the emails in "daily  
digest" mode.

Arlin

On Dec 2, 2009, at 7:27 AM, Julie Thompson wrote:

> I apologise for not being on the teleconference, but I didnt get the  
> connection info until today.
>
> Julie
> ----- Original Message -----
> From: cda...@li...
> Date: Wednesday, December 2, 2009 13:03
> Subject: CDAO-discuss Digest, Vol 4, Issue 2
> To: cda...@li...
>
> > Send CDAO-discuss mailing list submissions to
> > cda...@li...
> >
> > To subscribe or unsubscribe via the World Wide Web, visit
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> > or, via email, send a message with subject or body 'help' to
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> >
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> >
> > When replying, please edit your Subject line so it is more specific
> > than "Re: Contents of CDAO-discuss digest..."
> >
> >
> > Today's Topics:
> >
> >    1. teleconference this afternoon (2:00 pm
> > Eastern,	GMT-5):
> >       connection info (Arlin Stoltzfus)
> >    2. Re: teleconference this afternoon (2:00 pm
> > Eastern,	GMT-5):
> >       connection info (Arlin Stoltzfus)
> >
> >
> > -----------------------------------------------------------------
> > -----
> >
> > Message: 1
> > Date: Tue, 1 Dec 2009 10:50:51 -0500
> > From: Arlin Stoltzfus <sto...@um...>
> > Subject: [CDAO-discuss] teleconference this afternoon (2:00 pm
> > Eastern,	GMT-5): connection info
> > To: cda...@li...
> > Message-ID: <474...@um...>
> > Content-Type: text/plain; charset=ISO-8859-1; format=flowed;  
> delsp=yes
> >
> > Below are the details on the teleconference later today (sorry
> > for not
> > sending out this message yesterday as promised).
> > Everyone involved
> > in developing or using CDAO is invited to participate.
> > Note that this
> > is a long-distance call that will be charged to your phone.
> >
> > date:  Tuesday, December 1, 2009
> > time: 2:00 pm Eastern (GMT -5)
> > dial-in number (long-distance charges apply): 1-213-289-0500
> > participant access code: 375259
> >
> > Agenda:
> >
> > 1.  teleconferences (schedule for next few months;
> > technology;
> > accessibility)
> > 2.  what happened at the Phyloinformatics VoCamp
> > 3.  project goals for 2010
> > 4.  (if time allows) consolidating and updating web sites
> >
> > Arlin
> >
> > On Dec 1, 2009, at 6:29 AM, Francisco Prosdocimi wrote:
> >
> > > De: Arlin Stoltzfus [mailto:sto...@um...]
> > >> The results of the poll indicate high availability for
> > Tuesday, Dec 1
> > >> at 2:00 pm Eastern US time.  Please mark your
> > calendars.  Connection
> > >> information will be sent out on Monday, the day before.
> > >
> > > Hello Arlin--
> > >
> > > I didn't receive anything yesterday about the connection
> > information
> > > on our teleconference.
> > > Might you please confirm that it is gonna happen today and
> > inform
> > > how to proceed with the connection.
> > >
> > > Thank you,
> > >
> > > --
> > > Prof. Francisco Prosdocimi, PhD
> > > -----------------------------
> > > Programa de P?s-Gradua??o em Ci?ncias Gen?micas e Biotecnologia
> > > Universidade Cat?lica de Bras?lia - UCB
> > > SGAN 916 M?dulo B, Bloco C Sala 213
> > > 70.790-160 - Bras?lia / DF - Brasil
> > > Fone: +55 61 34487173
> > > http://biotec.icb.ufmg.br/chicopros
> > >
> > >
> > >
> > > -----Mensagem original-----
> > > De: Arlin Stoltzfus [mailto:sto...@um...]
> > > Enviada: qua 25/11/2009 05:24
> > > Para: cda...@li...
> > > Assunto: Re: [CDAO-discuss] scheduling for next
> > meeting;regular
> > > monthly meetings
> > >
> > > On Nov 20, 2009, at 10:07 AM, Arlin Stoltzfus wrote:
> > >
> > >> So, can you please help me with the following three things,
> > each of
> > >> which will take a few minutes:
> > >>
> > >> 1.  Take the doodle poll to choose the next
> > telecon:  http://www.doodle.com/khuwm9t83d8qmeaz
> > >
> > > The results of the poll indicate high availability for
> > Tuesday, Dec 1
> > > at 2:00 pm Eastern US time.  Please mark your
> > calendars.  Connection
> > > information will be sent out on Monday, the day before.
> > >
> > >> 2.  Reply to this message with your choices for the best
> > time for a
> > >> regular monthly meeting (just arrange the options with > and
> > = to
> > >> indicate preference, e.g., M = F > T = W = Th)
> > >>
> > >> * best day of the week: M T W Th F
> > >> * best week of the month: 1 2 3 4
> > >> * best time of the day (Eastern US): 8:00, 10:00, 12:00, 14:00
> > >
> > > Based on limited responses, I am going to suggest the 2nd
> > Monday of
> > > the month at 10:00 Eastern.  Monday is a hard compromise
> > between> Julie's & Enrico's schedule.  Starting any earlier
> > than 10:00 am
> > > Eastern would be prohibitive for our friends on the left coast
> > of the
> > > US, and starting later is prohibitive for our friends in
> > Europe.  The
> > > next monthly teleconferences then would be:
> > >
> > > Monday, Dec 14, 10:00 am (Eastern US) -- probably will cancel
> > this one
> > > Monday, Jan 11, 10:00 am (Eastern US)
> > > Monday, Feb 8, 10:00 am (Eastern US)
> > > Monday, Mar 8, 10:00 am (Eastern US)
> > >
> > > Please mark your calendars.
> > >
> > > Arlin
> > > -------
> > > Arlin Stoltzfus (sto...@um...)
> > > Fellow, CARB; Adj. Assoc. Prof., UMBI; Research Biologist, NIST
> > > CARB, 9600 Gudelsky Drive, Rockville, MD
> > > tel: 240 314 6208; web: www.molevol.org
> > >
> > >
> > >
> > >
> > >
> > >
> >
> >
> >
> >
> > ------------------------------
> >
> > Message: 2
> > Date: Tue, 1 Dec 2009 16:29:05 -0500
> > From: Arlin Stoltzfus <sto...@um...>
> > Subject: Re: [CDAO-discuss] teleconference this afternoon (2:00 pm
> > Eastern,	GMT-5): connection info
> > To: cda...@li...
> > Message-ID: <25D...@um...>
> > Content-Type: text/plain; charset=US-ASCII; format=flowed; delsp=yes
> >
> > Dear all--
> >
> > Below are the notes from the CDAO telecon that happened
> > this
> > afternoon.  I'm writing these notes in MediaWiki syntax
> > because we
> > intend to use it in the future.
> >
> > I'm looking for someone who can start assembling resources for
> > a
> > tutorial.  The tutorial might explain what it means to do
> > "reasoning"
> > or "inference" using ontologies, illustrated with concepts from
> > CDAO.
> > Any takers?
> >
> > Arlin
> >
> > ----------
> > Notes from CDAO telecon, 1 December, 2009
> >
> > ==Overview and action items==
> >
> > The teleconference included Francisco, Enrico, and Arlin, and
> > lasted
> > just over an hour.  After going over the schedule for the
> > next few
> > telecons, Arlin gave a review of results of the project in
> > 2009.  Then
> > we discussed possible goals for 2010.  We ended by
> > committing to the
> > following action items, to be completed before the next telecon
> > on Jan
> > 11:
> >
> > * Enrico - can't commit to anything other than CREST
> > proposal
> > (possible ToLWeb connection to discuss with Arlin)
> > * Francisco - investigate options to convert web site to wiki
> > (either
> > on sourceforge or the NESCent-managed site at
> > evolutionaryontology.org)* Francisco - get some more concrete
> > information on the data-
> > annotation use-case for phylogenetics
> > * Arlin - finish a brief year-end report and distribute this
> > * Arlin - set up experimental RSS feed
> > * Arlin - find a volunteer (from among those not present) to
> > collect
> > resources for a tutorial
> >
> > ==Present==
> >
> > Francisco, Enrico and Arlin participated.  Arlin
> > facilitated the
> > meeting and took notes.  Enrico had to leave just before
> > 3:00 pm.
> > Arlin and Francisco stayed on until 3:15.
> >
> >
> > ==Agenda items==
> >
> > === teleconferences ===
> >
> > Regular telecons will be on the '''Second Monday''' of each
> > month at
> > '''10:00 am Eastern (GMT -5)'''.  The next ones (given that
> > we are
> > canceling the one on Dec 14) are:
> > * Monday, Jan 11, 10:00 am (Eastern US)
> > * Monday, Feb 8, 10:00 am (Eastern US)
> > * Monday, Mar 8, 10:00 am (Eastern US)
> >
> > === Project update ===
> >
> > Overview of 2009 (Arlin)
> > * changes to CDAO
> > * community development
> > * projects
> > ** data interop hackathon
> > ** Nexplorer3
> > ** VoCamp
> > ** Triple store and portal (Enrico)
> >
> > Comment (Francisco).  Colleagues have a use-case for
> > annotation.
> > Input data.  Annotate clade & lineage, other things.
> >
> > === Discussion of goals for 2010 ===
> >
> > We did not have enough people and time to complete this, but we
> > got
> > started.
> >
> > # Development and evaluation of CDAO content
> > #* Higher-level relations of concepts, e.g., how does an OTU
> > relate to
> > a "tree" (Arlin)
> > #* support for various annotations
> > # Growing a community of active developers and users
> > # Disseminating results and updates to broader community
> > #* more consistent, up-to-date web site
> > #* experiment with having an RSS feed
> > # Projects and use-cases
> > #* User interface for querying and annotation (Enrico)
> > #* MIAPA (Francisco)
> > # Funding prospects
> > #* NIH proposal (Enrico, Arlin, Gopal)
> > #* CREST proposal (Enrico)
> >
> > On Dec 1, 2009, at 10:50 AM, Arlin Stoltzfus wrote:
> >
> > > Below are the details on the teleconference later today (sorry
> > for not
> > > sending out this message yesterday as promised).
> > Everyone involved
> > > in developing or using CDAO is invited to participate.
> > Note that this
> > > is a long-distance call that will be charged to your phone.
> > >
> > > date:  Tuesday, December 1, 2009
> > > time: 2:00 pm Eastern (GMT -5)
> > > dial-in number (long-distance charges apply): 1-213-289-0500
> > > participant access code: 375259
> > >
> > > Agenda:
> > >
> > > 1.  teleconferences (schedule for next few months; technology;
> > > accessibility)
> > > 2.  what happened at the Phyloinformatics VoCamp
> > > 3.  project goals for 2010
> > > 4.  (if time allows) consolidating and updating web sites
> > >
> > > Arlin
> > >
> > > ---------------------------------------------------------------
> > ---------------
> > > Join us December 9, 2009 for the Red Hat Virtual Experience,
> > > a free event focused on virtualization and cloud computing.
> > > Attend in-depth sessions from your desk. Your couch. Anywhere.
> > > http://p.sf.net/sfu/redhat-sfdev2dev
> > > _______________________________________________
> > > CDAO-discuss mailing list
> > > CDA...@li...
> > > https://lists.sourceforge.net/lists/listinfo/cdao-discuss
> >
> >
> >
> >
> > ------------------------------
> >
> > -----------------------------------------------------------------
> > -------------
> > Join us December 9, 2009 for the Red Hat Virtual Experience,
> > a free event focused on virtualization and cloud computing.
> > Attend in-depth sessions from your desk. Your couch. Anywhere.
> > http://p.sf.net/sfu/redhat-sfdev2dev
> >
> > ------------------------------
> >
> > _______________________________________________
> > CDAO-discuss mailing list
> > CDA...@li...
> > https://lists.sourceforge.net/lists/listinfo/cdao-discuss
> >
> >
> > End of CDAO-discuss Digest, Vol 4, Issue 2
> > ******************************************
>
> Dr. Julie D. Thompson
> Laboratoire de Bioinformatique et Génomique Intégratives,
> Institut de Génétique et de Biologie Moléculaire et Cellulaire  
> (IGBMC),
> 1 rue Laurent Fries,
> 67404 Illkirch, France.
> Tel: (33) 388 65 34 97
> Fax: (33) 388 65 32 01
> http://www-igbmc.u-strasbg.fr
> ------------------------------------------------------------------------------
> Join us December 9, 2009 for the Red Hat Virtual Experience,
> a free event focused on virtualization and cloud computing.
> Attend in-depth sessions from your desk. Your couch. Anywhere.
> http://p.sf.net/sfu/redhat-sfdev2dev_______________________________________________
> CDAO-discuss mailing list
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> https://lists.sourceforge.net/lists/listinfo/cdao-discuss