Re: [CDAO-discuss] CDAO-discuss Digest, Vol 3, Issue 1

[Julie T. <ju...@ig...>]

There seems to be some confusion. I thought 2.30pm UTC -5, was 8.30pm french time, but nobody is online. sorry about that...Julie----- Original Message -----From: cda...@li...Date: Monday, November 2, 2009 19:22Subject: CDAO-discuss Digest, Vol 3, Issue 1To: cda...@li...> Send CDAO-discuss mailing list submissions to> 	cda...@li...> > To subscribe or unsubscribe via the World Wide Web, visit> 	https://lists.sourceforge.net/lists/listinfo/cdao-discuss> or, via email, send a message with subject or body 'help' to> 	cda...@li...> > You can reach the person managing the list at> 	cda...@li...> > When replying, please edit your Subject line so it is more specific> than "Re: Contents of CDAO-discuss digest..."> > > Today's Topics:> >    1. Re: next telecon for CDAO plans (Julie Thompson) > (Enrico Pontelli)>    2. Next Telecon for CDAO Plans (Enrico Pontelli)>    3. Re: next telecon for CDAO plans (Julie Thompson) > (Jim Balhoff)>    4. Re: RES: next telecon for CDAO plans (Julie Thompson)>       (Arlin Stoltzfus)> > > -----------------------------------------------------------------> -----> > Message: 1> Date: Mon, 2 Nov 2009 08:49:09 -0700> From: "Enrico Pontelli" <epo...@cs...>> Subject: Re: [CDAO-discuss] next telecon for CDAO plans (Julie> 	Thompson)> To: "'Arlin Stoltzfus'" <sto...@um...>,> 	<cda...@li...>> Message-ID: <008401ca5bd4$0789b4a0$169d1de0$@nmsu.edu>> Content-Type: text/plain;	charset="iso-8859-1"> > I believe we reached an agreement on a conference call for today > at 2:30pm.> Could please someone clarify time zone of reference (I had difficulty> understanding the UTC-5). > > Enrico> > > -----Original Message-----> From: Arlin Stoltzfus [mailto:sto...@um...] > Sent: Monday, October 26, 2009 2:12 PM> To: cda...@li...> Subject: Re: [CDAO-discuss] next telecon for CDAO plans (Julie > Thompson)> Julie has asked about Monday, Nov. 2 at 2:30 pm (UTC -5).  > This looks  > promising from the doodle poll-- Vivek, Jim and I are available > 1:30  > and 3:30, so presumably we are available at 2:30 as well.  > Enrico is  > available at 1:30 but not 3:30 so there may be a snag > there.  Enrico,  > can you do 2:30 on Monday, Nov 2?> > Is anyone *unavailable* on Monday, Nov. 2 at 2:30 pm (UTC -5)?> > If not, I will go ahead with this date and time.> > Arlin> > On Oct 25, 2009, at 2:23 AM, Julie Thompson wrote:> > > Would monday 2nd nov, at 2.30 pm eastern be ok for everybody?> >> > Julie> >> > ----- Original Message -----> > From: cda...@li...> > Date: Saturday, October 24, 2009 14:02> > Subject: CDAO-discuss Digest, Vol 2, Issue 2> > To: cda...@li...> >> > > Send CDAO-discuss mailing list submissions to> > > cda...@li...> > >> > > To subscribe or unsubscribe via the World Wide Web, visit> > > https://lists.sourceforge.net/lists/listinfo/cdao-discuss> > > or, via email, send a message with subject or body 'help' to> > > cda...@li...> > >> > > You can reach the person managing the list at> > > cda...@li...> > >> > > When replying, please edit your Subject line so it is more > specific> > than "Re: Contents of CDAO-discuss digest..."> > >> > >> > > Today's Topics:> > >> > >    1. Re: next telecon for CDAO plans (Arlin > Stoltzfus)> >    2. Re: next telecon for CDAO > plans (Enrico Pontelli)> > >> > >> > > -------------------------------------------------------------> ----> > > -----> > >> > > Message: 1> > > Date: Fri, 23 Oct 2009 10:06:52 -0400> > > From: Arlin Stoltzfus <sto...@um...>> > > Subject: Re: [CDAO-discuss] next telecon for CDAO plans> > > To: cda...@li...> > > Message-ID: <C2D...@um...>> > > Content-Type: text/plain; charset="us-ascii"> > >> > > We are at an impasse already.  There is no time when we can> > > get both> > > Enrico and Julie.> > >> > > Enrico, is there any way that you can free up Wednesday at> > > 8:30> > > mountain time (10:30 EDT)?> > >> > > Julie, can you free up Monday, Nov 2 at 1:30 pm Eastern?> > >> > > I forgot to add time-zone support to this poll, so its> > > misleading.> > > Let me clarify.  Strasbourg shifts its time (CET) on> > > October 25 from> > > UTC+2 to UTC+1, and we shift our Eastern time on November 1 from> > > UTC> > > -4 to UTC -5.> > >> > > So, Eastern and CET are 6 hours apart from now until *this*> > > Sunday,> > > and 6 hours apart after *next* Sunday, but in the interval next> > > week,> > > we will be 5 hours apart.> > >> > > Does that change anything?> > >> > > Arlin> > >> > > On Oct 21, 2009, at 11:43 AM, Arlin Stoltzfus wrote:> > >> > > > Dear CDAO developers--> > > >> > > > Its about time for another teleconference to check in on> > > progress> > > > and plans with CDAO.  Two timely issues to consider are> > > the VoCamp,> > > > and an opportunity for a short-term high-impact project.> > > The> > > > Phyloinformatics VoCamp (at the Biodiversity Info> > > Standards> > > > conference in Montpellier, France) is coming up in 3 weeks and> > > there> > > > are a variety of ways in which CDAO may be involved.> > > Probably we> > > > will be asked to give a CDAO boot camp to interested > parties--> > > the> > > > better that is, the more people learn about CDAO.  In> > > regard to a> > > > short-term project, Enrico has the capacity to devote> > > graduate> > > > students to a project over the next 6 to 9 months, if we can> > > come up> > > > with something that is compelling and practicable.> > > >> > > > I have made a doodle poll here for time slots (in Eastern> > > Daylight> > > > Time) starting Friday and going 2 weeks ahead:> > > >> > > >   http://www.doodle.com/n8wapcah489nah58> > > >> > > > Please indicate your availability as soon as possible.> > > >> > > > If there is a desire for some wiki space to develop ideas,> > > I'll ask> > > > for a volunteer to help me set this up at > sourceforge.  Thanks,> > > >> > > > Arlin> > > > -------> > > > Arlin Stoltzfus (sto...@um...)> > > > Fellow, CARB; Adj. Assoc. Prof., UMBI; Research Biologist, NIST> > > > CARB, 9600 Gudelsky Drive, Rockville, MD> > > > tel: 240 314 6208; web: www.molevol.org> > >> > > -------------- next part --------------> > > An HTML attachment was scrubbed...> > >> > > ------------------------------> > >> > > Message: 2> > > Date: Fri, 23 Oct 2009 08:17:45 -0600> > > From: "Enrico Pontelli" <epo...@cs...>> > > Subject: Re: [CDAO-discuss] next telecon for CDAO plans> > > To: "'Arlin Stoltzfus'" <sto...@um...>,> > > <cda...@li...>> > > Message-ID: <004301ca53eb$9a495e80$cedc1b80$@nmsu.edu>> > > Content-Type: text/plain; charset="us-ascii"> > >> > > Unfortunately I will be in Pittsburgh until Wednesday night,> > > that's why the> > > start of my week is completely off. My Monday 2nd can be made> > > completelyavailable, and if really needed I can try to shuffle> > > meetings on Tuesday 3rd> > > (but only after 10:30 MST since I teach class before that).> > >> > >> > >> > > Enrico> > >> > >> > >> > > From: Arlin Stoltzfus [mailto:sto...@um...]> > > Sent: Friday, October 23, 2009 8:07 AM> > > To: cda...@li...> > > Subject: Re: [CDAO-discuss] next telecon for CDAO plans> > >> > >> > >> > > We are at an impasse already.  There is no time when we can> > > get both Enrico> > > and Julie.> > >> > >> > >> > > Enrico, is there any way that you can free up Wednesday at 8:30> > > mountaintime (10:30 EDT)?> > >> > >> > >> > > Julie, can you free up Monday, Nov 2 at 1:30 pm Eastern?> > >> > >> > >> > > I forgot to add time-zone support to this poll, so its> > > misleading.  Let me> > > clarify.  Strasbourg shifts its time (CET) on October 25> > > from UTC+2 to> > > UTC+1, and we shift our Eastern time on November 1 from UTC -4> > > to UTC -5.> > >> > >> > >> > > So, Eastern and CET are 6 hours apart from now until *this*> > > Sunday, and 6> > > hours apart after *next* Sunday, but in the interval next week,> > > we will be 5> > > hours apart.> > >> > >> > >> > > Does that change anything?> > >> > >> > >> > > Arlin> > >> > >> > >> > > On Oct 21, 2009, at 11:43 AM, Arlin Stoltzfus wrote:> > >> > >> > >> > >> > >> > > Dear CDAO developers--> > >> > >> > >> > > Its about time for another teleconference to check in on> > > progress and plans> > > with CDAO.  Two timely issues to consider are the VoCamp,> > > and an opportunity> > > for a short-term high-impact project.  The Phyloinformatics> > > VoCamp (at the> > > Biodiversity Info Standards conference in Montpellier, France)> > > is coming up> > > in 3 weeks and there are a variety of ways in which CDAO may be> > > involved.Probably we will be asked to give a CDAO boot camp to> > > interested parties--> > > the better that is, the more people learn about CDAO.  In> > > regard to a> > > short-term project, Enrico has the capacity to devote graduate> > > students to a> > > project over the next 6 to 9 months, if we can come up with> > > something that> > > is compelling and practicable.> > >> > >> > >> > > I have made a doodle poll here for time slots (in Eastern> > > Daylight Time)> > > starting Friday and going 2 weeks ahead:> > >> > >> > >> > >   http://www.doodle.com/n8wapcah489nah58> > >> > >> > >> > > Please indicate your availability as soon as possible.> > >> > >> > >> > > If there is a desire for some wiki space to develop ideas, I'll> > > ask for a> > > volunteer to help me set this up at sourceforge.> > > Thanks,> > >> > >> > >> > > Arlin> > >> > > -------> > >> > > Arlin Stoltzfus (sto...@um...)> > >> > > Fellow, CARB; Adj. Assoc. Prof., UMBI; Research Biologist, NIST> > >> > > CARB, 9600 Gudelsky Drive, Rockville, MD> > >> > > tel: 240 314 6208; web: www.molevol.org> > > <http://www.molevol.org/>> > >> > >> > >> > > -------------- next part --------------> > > An HTML attachment was scrubbed...> > >> > > ------------------------------> > >> > > -------------------------------------------------------------> ----> > > -------------> > > Come build with us! The BlackBerry(R) Developer Conference in> > > SF, CA> > > is the only developer event you need to attend this year.> > > Jumpstart your> > > developing skills, take BlackBerry mobile applications to market> > > and stay> > > ahead of the curve. Join us from November 9 - 12, 2009. > Register  > > now!> > > http://p.sf.net/sfu/devconference> > >> > > ------------------------------> > >> > > _______________________________________________> > > CDAO-discuss mailing list> > > CDA...@li...> > > https://lists.sourceforge.net/lists/listinfo/cdao-discuss> > >> > >> > > End of CDAO-discuss Digest, Vol 2, Issue 2> > > ******************************************> >> > Dr. Julie D. Thompson> > Laboratoire de Bioinformatique et G?nomique Int?gratives,> > Institut de G?n?tique et de Biologie Mol?culaire et > Cellulaire  > > (IGBMC),> > 1 rue Laurent Fries,> > 67404 Illkirch, France.> > Tel: (33) 388 65 34 97> > Fax: (33) 388 65 32 01> > http://www-igbmc.u-strasbg.fr> >> -----------------------------------------------------------------> -----------> --> > Come build with us! The BlackBerry(R) Developer Conference in > SF, CA> > is the only developer event you need to attend this year. > Jumpstart  > > your> > developing skills, take BlackBerry mobile applications to > market and  > > stay> > ahead of the curve. Join us from November 9 - 12, 2009. > Register now!> >> http://p.sf.net/sfu/devconference___________________________________________> ____> > CDAO-discuss mailing list> > CDA...@li...> > https://lists.sourceforge.net/lists/listinfo/cdao-discuss> > > -----------------------------------------------------------------> -----------> --> Come build with us! The BlackBerry(R) Developer Conference in > SF, CA> is the only developer event you need to attend this year. > Jumpstart your> developing skills, take BlackBerry mobile applications to market > and stay > ahead of the curve. Join us from November 9 - 12, 2009. Register now!> http://p.sf.net/sfu/devconference> _______________________________________________> CDAO-discuss mailing list> CDA...@li...> https://lists.sourceforge.net/lists/listinfo/cdao-discuss> > > > > ------------------------------> > Message: 2> Date: Mon, 2 Nov 2009 08:55:28 -0700> From: "Enrico Pontelli" <epo...@cs...>> Subject: [CDAO-discuss] Next Telecon for CDAO Plans> To: <cda...@li...>> Message-ID: <009b01ca5bd4$e8d9c260$ba8d4720$@nmsu.edu>> Content-Type: text/plain; charset="us-ascii"> > We will have a telecon to discuss next objectives and short-term > goals for> CDAO development.  The telecon is on today at 2:30pm > eastern time (12:30> Mountain, 1:30 Central). The contact number is:> >  > > Toll-free Tel: 1-866-705-2554> Toll Tel: 1-913-227-1201> Participant Passcode: 736420> > > > As Arlin mentioned a few days back, the two short term > objectives are> > 1.       CDAO in the VoCamp> > 2.       MIAPA-like support and > other short term projects> >  > > Enrico> >  > > =========================================================================> > Department of Computer > Science                                Voice: +1> (575) 646-6239> > New Mexico State > University                                          Fax:> +1 (575) 646-1002> > Box 30001, MSC > CS                          > > Las Cruces, NM 88003> >  > > -------------- next part --------------> An HTML attachment was scrubbed...> > ------------------------------> > Message: 3> Date: Mon, 2 Nov 2009 12:45:13 -0500> From: Jim Balhoff <ba...@ne...>> Subject: Re: [CDAO-discuss] next telecon for CDAO plans (Julie> 	Thompson)> To: Arlin Stoltzfus <sto...@um...>> Cc: cda...@li...> Message-ID: <0C2...@ne...>> Content-Type: text/plain; charset=us-ascii; format=flowed; delsp=yes> > FYI - I don't think I'll be able to call in today, but I mainly > just  > wanted to stay in the loop on CDAO. I'll take a look at any > minutes  > that are posted.> > Thanks,> Jim> > > ____________________________________________> James P. Balhoff, Ph.D.> National Evolutionary Synthesis Center> 2024 West Main St., Suite A200> Durham, NC 27705> USA> > > > > ------------------------------> > Message: 4> Date: Mon, 2 Nov 2009 13:21:57 -0500> From: Arlin Stoltzfus <sto...@um...>> Subject: Re: [CDAO-discuss] RES: next telecon for CDAO plans (Julie> 	Thompson)> To: cda...@li...> Message-ID: <9DE...@um...>> Content-Type: text/plain; charset=ISO-8859-1; format=flowed; delsp=yes> > On Oct 31, 2009, at 8:12 AM, Francisco Prosdocimi wrote:> > > I'm still here. Last week I was off to the Brazilian > conference on  > > bioinformatics and I won the 2nd prize -- actually an > honorable  > > mention -- on the databases-ontology section with our work > (amongst  > > 36 posters in this area). The presentation was well received > by the  > > evaluation committee and I'm looking forward to test CDAO soon > using  > > actual data (and to add some phenetics missing concepts on it).> > Congratulations!  We should put this on the CDAO web site.> > Arlin> > > Outstanding speakers were also present in this conference. > Peer Bork  > > (from EBI-Heidelberg) have shown a very beautiful analysis > of  > > metatranscriptomics in different levels of profoundness in > the  > > Sarga?os Sea using Venter's data (if I understood well). I had > the  > > impression that we should think on how to represent > metagenomics  > > data using CDAO... I guess it is gonna be useful...> >> > Nick Goldman (from EBI-Cambridge) presented an algorithm > for  > > Evolutionary Multiple Alignments. He realized that gap-costs > would  > > lead progressive multiple alignment tools to over-estimate > the  > > number of deletion events; and minimize gaps > (http://www.ebi.ac.uk/goldman-srv/prank/differences/ > > ). So, he produced an algorithm producing a guide-tree that > helps to  > > reduce this bias and claims to make a better > "evolutionary"  > > alignment. He convinced me (and all the audience) about the > utility  > > of his approach... but certainly Julie would be a better judge > on  > > this subject. Please follow this at > http://www.ebi.ac.uk/goldman-srv/prank/> > (He claims that even manual curated alignments, such as the > ones on  > > BaliBASE would not be good positive controls to testing > his  > > software... he really claims to make evolutionary-alignments > that  > > would be invisible to the human eye... sure his methods need > to be  > > checked carefully, but I think he found a real problem in > standard  > > multiple alignment sequence techniques.)> >> > I will be glad to follow your discussions on Nov 2nd; if > I  > > calculated well it doesn't match any of my classes. :)> >> > ps: I've found a prototype of MACSIMS alignment annotation > from  > > Goldman's group too... but it is very application-specific and > still  > > far away from CDAO semantics (http://www.ebi.ac.uk/goldman-> srv/hsaml/example.html > > )... he stayed some minutes seeing my poster but refused a > verbal  > > explanation... "it is very clear" in the poster, he said...> >> > See you,> >> > -- > > Prof. Francisco Prosdocimi, PhD> > -----------------------------> > Programa de P?s-Gradua??o em Ci?ncias Gen?micas e Biotecnologia> > Universidade Cat?lica de Bras?lia - UCB> > SGAN 916 M?dulo B, Bloco C Sala 213> > 70.790-160 - Bras?lia / DF - Brasil> > Fone: +55 61 34487173> > http://biotec.icb.ufmg.br/chicopros> >> >> >> > -----Mensagem original-----> > De: Enrico Pontelli [mailto:epo...@cs...]> > Enviada: seg 26/10/2009 09:43> > Para: Arlin Stoltzfus> > Cc: cda...@li...> > Assunto: Re: [CDAO-discuss] next telecon for CDAO plans > (Julie  > > Thompson)> >> > I am sure I can shuffle things and make myself available.> >> > Enrico> >> > On Oct 26, 2009, at 2:12 PM, Arlin Stoltzfus wrote:> >> >> Julie has asked about Monday, Nov. 2 at 2:30 pm (UTC -> 5).  This looks> >> promising from the doodle poll-- Vivek, Jim and I are > available 1:30> >> and 3:30, so presumably we are available at 2:30 as > well.  Enrico is> >> available at 1:30 but not 3:30 so there may be a snag > there.  Enrico,> >> can you do 2:30 on Monday, Nov 2?> >>> >> Is anyone *unavailable* on Monday, Nov. 2 at 2:30 pm (UTC -5)?> >>> >> If not, I will go ahead with this date and time.> >>> >> Arlin> >>> >> On Oct 25, 2009, at 2:23 AM, Julie Thompson wrote:> >>> >>> Would monday 2nd nov, at 2.30 pm eastern be ok for everybody?> >>>> >>> Julie> >>>> >>> ----- Original Message -----> >>> From: cda...@li...> >>> Date: Saturday, October 24, 2009 14:02> >>> Subject: CDAO-discuss Digest, Vol 2, Issue 2> >>> To: cda...@li...> >>>> >>>> Send CDAO-discuss mailing list submissions to> >>>> cda...@li...> >>>>> >>>> To subscribe or unsubscribe via the World Wide Web, visit> >>>> https://lists.sourceforge.net/lists/listinfo/cdao-discuss> >>>> or, via email, send a message with subject or body 'help' to> >>>> cda...@li...> >>>>> >>>> You can reach the person managing the list at> >>>> cda...@li...> >>>>> >>>> When replying, please edit your Subject line so it is more > specific>>>> than "Re: Contents of CDAO-discuss digest..."> >>>>> >>>>> >>>> Today's Topics:> >>>>> >>>>  1. Re: next telecon for CDAO plans (Arlin Stoltzfus)> >>>>  2. Re: next telecon for CDAO plans (Enrico Pontelli)> >>>>> >>>>> >>>> ------------------------------------------------------------> -----> >>>> -----> >>>>> >>>> Message: 1> >>>> Date: Fri, 23 Oct 2009 10:06:52 -0400> >>>> From: Arlin Stoltzfus <sto...@um...>> >>>> Subject: Re: [CDAO-discuss] next telecon for CDAO plans> >>>> To: cda...@li...> >>>> Message-ID: <C2D225D4-62F6-48FF-9559-> 441...@um...>>>>> Content-Type: text/plain; > charset="us-ascii"> >>>>> >>>> We are at an impasse already.  There is no time when > we can> >>>> get both> >>>> Enrico and Julie.> >>>>> >>>> Enrico, is there any way that you can free up Wednesday at> >>>> 8:30> >>>> mountain time (10:30 EDT)?> >>>>> >>>> Julie, can you free up Monday, Nov 2 at 1:30 pm Eastern?> >>>>> >>>> I forgot to add time-zone support to this poll, so its> >>>> misleading.> >>>> Let me clarify.  Strasbourg shifts its time (CET) on> >>>> October 25 from> >>>> UTC+2 to UTC+1, and we shift our Eastern time on November 1 from> >>>> UTC> >>>> -4 to UTC -5.> >>>>> >>>> So, Eastern and CET are 6 hours apart from now until *this*> >>>> Sunday,> >>>> and 6 hours apart after *next* Sunday, but in the interval next> >>>> week,> >>>> we will be 5 hours apart.> >>>>> >>>> Does that change anything?> >>>>> >>>> Arlin> >>>>> >>>> On Oct 21, 2009, at 11:43 AM, Arlin Stoltzfus wrote:> >>>>> >>>>> Dear CDAO developers--> >>>>>> >>>>> Its about time for another teleconference to check in on> >>>> progress> >>>>> and plans with CDAO.  Two timely issues to consider are> >>>> the VoCamp,> >>>>> and an opportunity for a short-term high-impact project.> >>>> The> >>>>> Phyloinformatics VoCamp (at the Biodiversity Info> >>>> Standards> >>>>> conference in Montpellier, France) is coming up in 3 weeks and> >>>> there> >>>>> are a variety of ways in which CDAO may be involved.> >>>> Probably we> >>>>> will be asked to give a CDAO boot camp to interested > parties--> >>>> the> >>>>> better that is, the more people learn about CDAO.  In> >>>> regard to a> >>>>> short-term project, Enrico has the capacity to devote> >>>> graduate> >>>>> students to a project over the next 6 to 9 months, if we can> >>>> come up> >>>>> with something that is compelling and practicable.> >>>>>> >>>>> I have made a doodle poll here for time slots (in Eastern> >>>> Daylight> >>>>> Time) starting Friday and going 2 weeks ahead:> >>>>>> >>>>> http://www.doodle.com/n8wapcah489nah58> >>>>>> >>>>> Please indicate your availability as soon as possible.> >>>>>> >>>>> If there is a desire for some wiki space to develop ideas,> >>>> I'll ask> >>>>> for a volunteer to help me set this up at > sourceforge.  Thanks,> >>>>>> >>>>> Arlin> >>>>> -------> >>>>> Arlin Stoltzfus (sto...@um...)> >>>>> Fellow, CARB; Adj. Assoc. Prof., UMBI; Research Biologist, NIST> >>>>> CARB, 9600 Gudelsky Drive, Rockville, MD> >>>>> tel: 240 314 6208; web: www.molevol.org> >>>>> >>>> -------------- next part --------------> >>>> An HTML attachment was scrubbed...> >>>>> >>>> ------------------------------> >>>>> >>>> Message: 2> >>>> Date: Fri, 23 Oct 2009 08:17:45 -0600> >>>> From: "Enrico Pontelli" <epo...@cs...>> >>>> Subject: Re: [CDAO-discuss] next telecon for CDAO plans> >>>> To: "'Arlin Stoltzfus'" <sto...@um...>,> >>>> <cda...@li...>> >>>> Message-ID: <004301ca53eb$9a495e80$cedc1b80$@nmsu.edu>> >>>> Content-Type: text/plain; charset="us-ascii"> >>>>> >>>> Unfortunately I will be in Pittsburgh until Wednesday night,> >>>> that's why the> >>>> start of my week is completely off. My Monday 2nd can be made> >>>> completelyavailable, and if really needed I can try to shuffle> >>>> meetings on Tuesday 3rd> >>>> (but only after 10:30 MST since I teach class before that).> >>>>> >>>>> >>>>> >>>> Enrico> >>>>> >>>>> >>>>> >>>> From: Arlin Stoltzfus [mailto:sto...@um...]> >>>> Sent: Friday, October 23, 2009 8:07 AM> >>>> To: cda...@li...> >>>> Subject: Re: [CDAO-discuss] next telecon for CDAO plans> >>>>> >>>>> >>>>> >>>> We are at an impasse already.  There is no time when > we can> >>>> get both Enrico> >>>> and Julie.> >>>>> >>>>> >>>>> >>>> Enrico, is there any way that you can free up Wednesday at 8:30> >>>> mountaintime (10:30 EDT)?> >>>>> >>>>> >>>>> >>>> Julie, can you free up Monday, Nov 2 at 1:30 pm Eastern?> >>>>> >>>>> >>>>> >>>> I forgot to add time-zone support to this poll, so its> >>>> misleading.  Let me> >>>> clarify.  Strasbourg shifts its time (CET) on October 25> >>>> from UTC+2 to> >>>> UTC+1, and we shift our Eastern time on November 1 from UTC > -4> >>>> to UTC -5.> >>>>> >>>>> >>>>> >>>> So, Eastern and CET are 6 hours apart from now until *this*> >>>> Sunday, and 6> >>>> hours apart after *next* Sunday, but in the interval next week,> >>>> we will be 5> >>>> hours apart.> >>>>> >>>>> >>>>> >>>> Does that change anything?> >>>>> >>>>> >>>>> >>>> Arlin> >>>>> >>>>> >>>>> >>>> On Oct 21, 2009, at 11:43 AM, Arlin Stoltzfus wrote:> >>>>> >>>>> >>>>> >>>>> >>>>> >>>> Dear CDAO developers--> >>>>> >>>>> >>>>> >>>> Its about time for another teleconference to check in on> >>>> progress and plans> >>>> with CDAO.  Two timely issues to consider are the VoCamp,> >>>> and an opportunity> >>>> for a short-term high-impact project.  The Phyloinformatics> >>>> VoCamp (at the> >>>> Biodiversity Info Standards conference in Montpellier, France)> >>>> is coming up> >>>> in 3 weeks and there are a variety of ways in which CDAO > may be> >>>> involved.Probably we will be asked to give a CDAO boot camp to> >>>> interested parties--> >>>> the better that is, the more people learn about CDAO.  In> >>>> regard to a> >>>> short-term project, Enrico has the capacity to devote graduate> >>>> students to a> >>>> project over the next 6 to 9 months, if we can come up with> >>>> something that> >>>> is compelling and practicable.> >>>>> >>>>> >>>>> >>>> I have made a doodle poll here for time slots (in Eastern> >>>> Daylight Time)> >>>> starting Friday and going 2 weeks ahead:> >>>>> >>>>> >>>>> >>>> http://www.doodle.com/n8wapcah489nah58> >>>>> >>>>> >>>>> >>>> Please indicate your availability as soon as possible.> >>>>> >>>>> >>>>> >>>> If there is a desire for some wiki space to develop ideas, I'll> >>>> ask for a> >>>> volunteer to help me set this up at sourceforge.> >>>> Thanks,> >>>>> >>>>> >>>>> >>>> Arlin> >>>>> >>>> -------> >>>>> >>>> Arlin Stoltzfus (sto...@um...)> >>>>> >>>> Fellow, CARB; Adj. Assoc. Prof., UMBI; Research Biologist, NIST> >>>>> >>>> CARB, 9600 Gudelsky Drive, Rockville, MD> >>>>> >>>> tel: 240 314 6208; web: www.molevol.org> >>>> <http://www.molevol.org/>> >>>>> >>>>> >>>>> >>>> -------------- next part --------------> >>>> An HTML attachment was scrubbed...> >>>>> >>>> ------------------------------> >>>>> >>>> ------------------------------------------------------------> -----> >>>> -------------> >>>> Come build with us! The BlackBerry(R) Developer Conference in> >>>> SF, CA> >>>> is the only developer event you need to attend this year.> >>>> Jumpstart your> >>>> developing skills, take BlackBerry mobile applications to market> >>>> and stay> >>>> ahead of the curve. Join us from November 9 - 12, 2009. Register> >>> now!> >>>> http://p.sf.net/sfu/devconference> >>>>> >>>> ------------------------------> >>>>> >>>> _______________________________________________> >>>> CDAO-discuss mailing list> >>>> CDA...@li...> >>>> https://lists.sourceforge.net/lists/listinfo/cdao-discuss> >>>>> >>>>> >>>> End of CDAO-discuss Digest, Vol 2, Issue 2> >>>> ******************************************> >>>> >>> Dr. Julie D. Thompson> >>> Laboratoire de Bioinformatique et G?nomique Int?gratives,> >>> Institut de G?n?tique et de Biologie Mol?culaire et Cellulaire> >>> (IGBMC),> >>> 1 rue Laurent Fries,> >>> 67404 Illkirch, France.> >>> Tel: (33) 388 65 34 97> >>> Fax: (33) 388 65 32 01> >>> http://www-igbmc.u-strasbg.fr> >>> -------------------------------------------------------------> -----------------> >>> Come build with us! The BlackBerry(R) Developer Conference > in SF, CA> >>> is the only developer event you need to attend this year. > Jumpstart>>> your> >>> developing skills, take BlackBerry mobile applications to > market and> >>> stay> >>> ahead of the curve. Join us from November 9 - 12, 2009. > Register  > >>> now!> >>> > http://p.sf.net/sfu/devconference_______________________________________________>>> CDAO-discuss mailing list> >>> CDA...@li...> >>> https://lists.sourceforge.net/lists/listinfo/cdao-discuss> >>> >>> >> --------------------------------------------------------------> ----------------> >> Come build with us! The BlackBerry(R) Developer Conference in > SF, CA> >> is the only developer event you need to attend this year. Jumpstart> >> your> >> developing skills, take BlackBerry mobile applications to > market and> >> stay> >> ahead of the curve. Join us from November 9 - 12, 2009. > Register now!> >> http://p.sf.net/sfu/devconference> >> _______________________________________________> >> CDAO-discuss mailing list> >> CDA...@li...> >> https://lists.sourceforge.net/lists/listinfo/cdao-discuss> >> >> > ---------------------------------------------------------------> ---------------> > Come build with us! The BlackBerry(R) Developer Conference in > SF, CA> > is the only developer event you need to attend this year. > Jumpstart  > > your> > developing skills, take BlackBerry mobile applications to > market and  > > stay> > ahead of the curve. Join us from November 9 - 12, 2009. > Register now!> > http://p.sf.net/sfu/devconference> > _______________________________________________> > CDAO-discuss mailing list> > CDA...@li...> > https://lists.sourceforge.net/lists/listinfo/cdao-discuss> >> > > > > ------------------------------> > -----------------------------------------------------------------> -------------> Come build with us! The BlackBerry(R) Developer Conference in > SF, CA> is the only developer event you need to attend this year. > Jumpstart your> developing skills, take BlackBerry mobile applications to market > and stay > ahead of the curve. Join us from November 9 - 12, 2009. Register now!> http://p.sf.net/sfu/devconference> > ------------------------------> > _______________________________________________> CDAO-discuss mailing list> CDA...@li...> https://lists.sourceforge.net/lists/listinfo/cdao-discuss> > > End of CDAO-discuss Digest, Vol 3, Issue 1> ******************************************Dr. Julie D. Thompson Laboratoire de Bioinformatique et Génomique Intégratives,Institut de Génétique et de Biologie Moléculaire et Cellulaire (IGBMC),1 rue Laurent Fries,67404 Illkirch, France.Tel: (33) 388 65 34 97Fax: (33) 388 65 32 01http://www-igbmc.u-strasbg.fr