Activity for Collaborative Computing Project for NMR
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Luca created ticket #220
Analysis V3 bugs moved to Bitbucket
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strip positions and widths not being updated
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strip positions and widths not being updated
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Right mouse menu navigation
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Feature request: zoom behaviour
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Added in B3
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Missing Experiment type filter in Spectrum editor popup
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Ondoing displaying a spectrum leaves graphics program in dyscuctrional state
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Ondoing displaying a spectrum leaves graphics program in dyscuctrional state
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Fixed
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Python Console check not being updated
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qt file chooser incomplete style sheet
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1D toolbars buttons
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Add sample drop-down to spectrum properties pop-up
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Feature request: shortcut/menu item(s) to toggle displayed spectra
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Added in B3
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1d display can cause resizing when cursor moves
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White text on light grey background legibility problems
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fixed in b3
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Suggestion: wording in Spectrum Group Setup
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fixed in b3
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Text layout and updating of Spectrum Group Setup
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Fixed in b3
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Edward Brooksbank modified ticket #219
Peak picking error in flipped views of 3D data
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fixed
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Brian Smith posted a comment on ticket #218
RFD = request for discussion :)
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Peak picking error in flipped views of 3D data
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RFD: How Z-thickness should be calculated and displayed
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There seem to be similar issues and inconsistencies with the navigation of the current module when you double click on a peak in a peak table.
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Feature request: zoom behaviour
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White text on light grey background legibility problems
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Spectrum names not faithfully imported from v2 projects
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initial layout image
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Text layout and updating of Spectrum Group Setup
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Suggestion: wording in Spectrum Group Setup
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Documentation: placement of module handle/label
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Feature request: what's the "current" module?
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Feature request: shortcut/menu item(s) to toggle displayed spectra
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FP misbehaviour and inconsistency in 3.0.b2
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project for this bug
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v2 project for this. There's also an issue with the COSY spectrum name not transfering properly.
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SequenceGraph issues with unusual amino acids
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LabelledMixture import error for v2 project with ECI sample info
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wb104 committed [r10168]
add
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add
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Stop region from becoming too small with the zoom
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Rasmus fixes
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Hopefully sorted now (protect against deleted peak / peakList / peakListView in relevant notifier)
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Deleting PeakLists causes error in PeakView
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add
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current.positions is the last clicked location. current.cursorPosition is the last "hovered" position. (Note there the former has an "s" and the latter does not.) We don't use the last clicked location for anything so could get rid of current.positions.
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This doesn't seem to be happening now.
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Opening a project with a blank display fires createBlankDisplay logging statement
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Use non-gui version for showWarning
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Puldowns get squashed
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Looks like there is now a minimum width for the table so you cannot squash down.
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spectrum toggling bug
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Closed since not reproduced.
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Add dependencies list
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Chain creation problems
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Chain creation issues
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Chain creation problems
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Last two parts resolved so close and open new ticket for remaining items.
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Sequence Module problem
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Show Sequence problems
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All but last part dealt with. Created new ticket just for last part.
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It now updates for creation and deletion of a chain.
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Sequence Module pays no attention to chain creation / deletion
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Now showing.
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Residues not showing in Sidebar
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CreateChainPopup in wrong directory
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Backbone Assignment module stops working after some exception
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Problem was in function _processDroppedNmrResidue(). In there we have self.nmrResidueTable.setUpdateSilence(True) And the turning off of this needs to be in a try/finally block in case there is an exception thrown in the code (which is what happened in this case). Otherwise the table is never updated.
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Backbone Assignment module stops working after some exception
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Fogh posted a comment on ticket #199
OK, it is a feature request. But I think it is significant that we used to have Deleted as a right mouse command as well (at least that is what the user told me) but do not have it any more. That does lend it a bit of urgency.
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No peak delete on Macs
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The Del button methodology (so having to use the fn key) is the same behaviour as in v2. I'd say this is not a bug but a feature request.
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Deleting last peaklist
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Removal works for me. And I've updated the code so that if you try and pick peaks in a region or click to add a peak then if no peakList exists it will create one.
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Clone now added to right mouse menu of SideBar for chains. The New Chain dialog now defaults the chain code to the "next" available one.
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Chain creation problems
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CreateChainPopup in wrong directory
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SQ works for me
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Chain creation problems
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Chain creation problems
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Show Sequence problems
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Residues not showing in Sidebar
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No peak delete on Macs
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Deleting last peaklist
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Add dependencies list
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Add TAU as another possibility for nuc for pseudo dimension
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Sync the spectrum and spectrumView postiiveContourBase (etc.).
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Peal picking contour level and display contour level out of sync
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This one is a bit of a question. The model allows for changing the contour display...
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The spectrum editor is using spectrum.positiveContourBase. The drawing is using spectrumView.positiveContourBase....
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Peal picking contour level and display contour level out of sync
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Peal picking contour level and display contour level out of sync
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Tested in rasmus branch and is ok now (in that branch).
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peak.assignDimension() allows mismatched isotope assignment
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Fixed (in Rasmus Branch). Passed to Wayne for testing
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