Menu
▾
▴
Re: ccplot 1.5-rc7 build error
|
From: Ryan S. <rsc...@gm...> - 2013-11-22 21:20:57
|
Hi Peter,
My machine is running Mac OS X 10.8.4.
Here's the requested output:
bash-3.2$ file `which python`
/usr/bin/python: Mach-O universal binary with 2 architectures
/usr/bin/python (for architecture i386): Mach-O executable i386
/usr/bin/python (for architecture x86_64): Mach-O 64-bit executable x86_64
bash-3.2$ file /opt/local/lib/libhdfeos.0.dylib
/opt/local/lib/libhdfeos.0.dylib: Mach-O 64-bit dynamically linked shared
library x86_64
bash-3.2$ python -V
Python 2.7.2
bash-3.2$ python -c 'import platform; print platform.machine(); print
> platform.architecture()'
x86_64
And here's output from ccplot -V
bash-3.2$ ccplot -V
Traceback (most recent call last):
File "/usr/local/bin/ccplot", line 53, in <module>
from mpl_toolkits import basemap
File
"/Library/Python/2.7/site-packages/mpl_toolkits/basemap/__init__.py", line
37, in <module>
import _geoslib
ImportError: dlopen(/Library/Python/2.7/site-packages/_geoslib.so, 2):
Symbol not found: _GEOSArea
Referenced from: /Library/Python/2.7/site-packages/_geoslib.so
Expected in: flat namespace
in /Library/Python/2.7/site-packages/_geoslib.so
Thanks!
Ryan
On Fri, Nov 22, 2013 at 1:04 PM, Peter Kuma <pet...@wa...> wrote:
> Ryan,
>
> The man page for the mac version of python mentions that it runs 64-bit
> by default, but it can be instructed to run 32-bit with:
>
> export VERSIONER_PYTHON_PREFER_32_BIT=yes
>
> So you can try setting this environment variable before running ccplot
> -V. But I'm not sure if it helps.
>
> Peter
>
> On 11/22/2013 09:48 PM, Peter Kuma wrote:
> > Ryan,
> >
> > It seems like libhdfeos.0.dylib is compiled as 64-bit, but python is
> > 32-bit (or vice-versa). Could you please try:
> >
> > file `which python`
> > file /opt/local/lib/libhdfeos.0.dylib
> > python -V
> > python -c 'import platform; print platform.machine(); print
> > platform.architecture()'
> >
> > Also if you can tell me your Mac OS X version...
> >
> > Hopefully, having more information will help.
> >
> > Cheers,
> >
> > Peter
> >
> > On 11/22/2013 08:57 PM, Ryan Scott wrote:
> >> Hi Peter,
> >>
> >> Unfortunately, I'm running into new trouble. Perhaps the issue might be
> >> specific to my machine?
> >>
> >> Here is output from a simple command which should work if installation
> >> were successful.
> >>
> >> bash-3.2$ ccplot -V
> >> Traceback (most recent call last):
> >> File "/usr/local/bin/ccplot", line 56, in <module>
> >> from ccplot.hdfeos import HDFEOS
> >> ImportError: dlopen(/Library/Python/2.7/site-packages/ccplot/hdfeos.so,
> >> 2): Symbol not found: _for_init
> >> Referenced from: /opt/local/lib/libhdfeos.0.dylib
> >> Expected in: flat namespace
> >> in /opt/local/lib/libhdfeos.0.dylib
> >>
> >> Thanks,
> >>
> >> Ryan
> >>
> >>
> >>
> >>
> >>
> >> On Fri, Nov 22, 2013 at 11:40 AM, Ryan Scott <rsc...@gm...
> >> <mailto:rsc...@gm...>> wrote:
> >>
> >> Hey Peter,
> >>
> >> I just ran the build script (using the latest setup.py file that you
> >> sent in the last message) and didn't receive any errors like those
> >> that have been causing a forced exit on previous attempts. I ran
> >> sudo python setup.py install and it seems to check out alright. Is
> >> there a way of testing the install to ensure that everything should
> >> work correctly before I embark on learning how to use ccplot?
> >>
> >> Attached is the previous setup.py script that resided in
> ccplot-master.
> >>
> >> Many thanks for your patience and assistance,
> >>
> >> Ryan
> >>
> >>
> >> On Fri, Nov 22, 2013 at 11:29 AM, Peter Kuma <
> pet...@wa...
> >> <mailto:pet...@wa...>> wrote:
> >>
> >> Ryan,
> >>
> >> Yes it helped! The library_dirs option is apparently not even
> >> applied.
> >> Could you please send me your current setup.py - in case
> >> anything was
> >> wrongly applied?
> >>
> >> Attached is one that should have all modifications needed.
> >>
> >> Peter
> >>
> >> On 11/22/2013 08:11 PM, Ryan Scott wrote:
> >> > Hi Peter,
> >> >
> >> > Here's the build output after having applied the .diff file
> in the
> >> > ccplot-master directory:
> >> >
> >> > bash-3.2$ cd ~/Desktop/ccplot-master/
> >> > bash-3.2$ ls
> >> > LICENSEccplot
> >> > MANIFEST.inccplot-verbose-link.diff
> >> > NEWScmap
> >> > README.mdman
> >> > binsetup.py
> >> > buildtest
> >> > bash-3.2$ patch < ccplot-verbose-link.diff
> >> > (Stripping trailing CRs from patch.)
> >> > patching file setup.py
> >> > bash-3.2$ python setup.py build
> >> > running build
> >> > running build_py
> >> > running build_ext
> >> > skipping 'ccplot/hdf.c' Cython extension (up-to-date)
> >> > building 'ccplot.hdf' extension
> >> > clang -fno-strict-aliasing -fno-common -dynamic -g -Os -pipe
> >> -fno-common
> >> > -fno-strict-aliasing -fwrapv -mno-fused-madd -DENABLE_DTRACE
> >> -DMACOSX
> >> > -DNDEBUG -Wall -Wstrict-prototypes -Wshorten-64-to-32 -DNDEBUG
> >> -g -Os
> >> > -Wall -Wstrict-prototypes -DENABLE_DTRACE -arch i386 -arch
> x86_64
> >> > -I/Users/ryan/Desktop/src/boost_1_53_0 -pipe
> -I/usr/include/hdf
> >> > -I/usr/local/include/hdf -I/opt/local/include
> >> >
> >>
> -I/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy/core/include
> >> >
> >>
> -I/System/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7
> >> > -c ccplot/hdf.c -o
> build/temp.macosx-10.8-intel-2.7/ccplot/hdf.o
> >> > clang: warning: argument unused during compilation:
> >> '-mno-fused-madd'
> >> > In file included from ccplot/hdf.c:314:
> >> > In file included from
> >> >
> >>
> /System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy/core/include/numpy/arrayobject.h:14:
> >> > In file included from
> >> >
> >>
> /System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy/core/include/numpy/ndarrayobject.h:26:
> >> >
> >>
> /System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy/core/include/numpy/__multiarray_api.h:1532:1:
> >> > warning:
> >> > unused function '_import_array' [-Wunused-function]
> >> > _import_array(void)
> >> > ^
> >> > In file included from ccplot/hdf.c:315:
> >> > In file included from
> >> >
> >>
> /System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy/core/include/numpy/ufuncobject.h:152:
> >> >
> >>
> /System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy/core/include/numpy/__ufunc_api.h:226:1:
> >> > warning:
> >> > unused function '_import_umath' [-Wunused-function]
> >> > _import_umath(void)
> >> > ^
> >> > 2 warnings generated.
> >> > In file included from ccplot/hdf.c:314:
> >> > In file included from
> >> >
> >>
> /System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy/core/include/numpy/arrayobject.h:14:
> >> > In file included from
> >> >
> >>
> /System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy/core/include/numpy/ndarrayobject.h:26:
> >> >
> >>
> /System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy/core/include/numpy/__multiarray_api.h:1532:1:
> >> > warning:
> >> > unused function '_import_array' [-Wunused-function]
> >> > _import_array(void)
> >> > ^
> >> > In file included from ccplot/hdf.c:315:
> >> > In file included from
> >> >
> >>
> /System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy/core/include/numpy/ufuncobject.h:152:
> >> >
> >>
> /System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy/core/include/numpy/__ufunc_api.h:226:1:
> >> > warning:
> >> > unused function '_import_umath' [-Wunused-function]
> >> > _import_umath(void)
> >> > ^
> >> > 2 warnings generated.
> >> > clang -bundle -undefined dynamic_lookup -Wl,-F. -arch i386
> >> -arch x86_64
> >> > -L/Users/ryan/Desktop/src/hdf5-1.8.10/hdf5/lib
> >> > -I/Users/ryan/Desktop/src/boost_1_53_0
> >> > build/temp.macosx-10.8-intel-2.7/ccplot/hdf.o -lmfhdf -ldf
> >> -ljpeg -lz -o
> >> > build/lib.macosx-10.8-intel-2.7/ccplot/hdf.so -v
> >> > Apple LLVM version 4.2 (clang-425.0.28) (based on LLVM 3.2svn)
> >> > Target: x86_64-apple-darwin12.4.0
> >> > Thread model: posix
> >> > "/usr/bin/ld" -demangle -dynamic -arch i386 -bundle
> >> -macosx_version_min
> >> > 10.8.0 -undefined dynamic_lookup -undefined dynamic_lookup -o
> >> > /var/folders/fx/t186xjbj1wl66fscp60wm0yw0000gp/T//i8J7H3.out
> >> > -L/Users/ryan/Desktop/src/hdf5-1.8.10/hdf5/lib -F.
> >> > build/temp.macosx-10.8-intel-2.7/ccplot/hdf.o -lmfhdf -ldf
> >> -ljpeg -lz
> >> > -arch_multiple -final_output
> >> > build/lib.macosx-10.8-intel-2.7/ccplot/hdf.so -lSystem
> >> > /usr/bin/../lib/clang/4.2/lib/darwin/libclang_rt.eprintf.a
> >> > /usr/bin/../lib/clang/4.2/lib/darwin/libclang_rt.osx.a
> >> > ld: library not found for -lmfhdf
> >> > clang: error: linker command failed with exit code 1 (use -v
> >> to see
> >> > invocation)
> >> > error: command 'clang' failed with exit status 1
> >> >
> >> > Hopefully this helps!
> >> >
> >> > -Ryan
> >> >
> >> >
> >> >
> >> >
> >> >
> >> >
> >> >
> >> >
> >> >
> >> >
> >> >
> >> >
> >> >
> >> >
> >> >
> >> >
> >> >
> >> > On Fri, Nov 22, 2013 at 10:58 AM, Peter Kuma
> >> <pet...@wa... <mailto:pet...@wa...>
> >> > <mailto:pet...@wa...
> >> <mailto:pet...@wa...>>> wrote:
> >> >
> >> > Hi Ryan,
> >> >
> >> > dylib is the equivalent of so files on other unix systems.
> >> The linker
> >> > should find the library just fine if it is indeed located
> >> under
> >> > /opt/local/lib/libmfhdf.dylib. I don't know why it does
> not.
> >> >
> >> > The best I can think of is to add a verbose flag to the
> >> linker to get a
> >> > more detailed error report. A patch is attached. It can be
> >> applied with:
> >> >
> >> > patch < ccplot-verbose-link.diff
> >> >
> >> > in the ccplot directory. If you can send me the build
> >> output that would
> >> > be great.
> >> >
> >> > Regards,
> >> >
> >> > Peter
> >> >
> >> > On 11/22/2013 06:47 PM, Ryan Scott wrote:
> >> > > Hi Peter,
> >> > >
> >> > > After receiving the same error with the up-to-date
> >> ccplot-master, I
> >> > > checked /opt/local/lib and I have the following
> >> libmfhdf* files
> >> > >
> >> > > libmfhdf.0.dylib
> >> > > libmfhdf.a
> >> > > libmfhdf.dylib
> >> > > libmfhdf.la <http://libmfhdf.la> <http://libmfhdf.la>
> >> <http://libmfhdf.la>
> >> > >
> >> > > The lack of the libmfhdf.so file is presumably then the
> >> root of the
> >> > > error. Do you know where this can be obtained?
> >> > >
> >> > > Best, Ryan
> >> > >
> >> > >
> >> > >
> >> > > On Thu, Nov 21, 2013 at 11:53 PM, Peter Kuma
> >> > <pet...@wa... <mailto:pet...@wa...>
> >> <mailto:pet...@wa... <mailto:pet...@wa...>>
> >> > > <mailto:pet...@wa...
> >> <mailto:pet...@wa...> <mailto:pet...@wa...
> >> <mailto:pet...@wa...>>>>
> >> > wrote:
> >> > >
> >> > > Hi Ryan,
> >> > >
> >> > > I think this could be a similar problem as with the
> >> include
> >> > path. The
> >> > > solution depends on where the libmfhdf.so library
> >> is, I assume
> >> > it is
> >> > > /opt/local/lib. Please try adding the path to
> >> hdf_library_dirs in
> >> > > setup.py:
> >> > >
> >> > > - hdf_library_dirs = []
> >> > > + hdf_library_dirs = ['/opt/local/lib']
> >> > >
> >> > > (line 25)
> >> > >
> >> > > Or, if it does not work, please try locate
> libmfhdf.so.
> >> > >
> >> > > The current master incorporates both fixes for the
> >> include
> >> > path and
> >> > > MAX_VAR_DIMS.
> >> > >
> >> > > Regards,
> >> > >
> >> > > Peter
> >> > >
> >> > > On 11/22/2013 01:38 AM, Ryan Scott wrote:
> >> > > > Hello Peter,
> >> > > >
> >> > > > I have attempted to build both ccplot-master as
> >> well as
> >> > > ccplot-1.5-rc7,
> >> > > > ensuring that hdf.c everywhere reads
> >> H4_MAX_VAR_DIMS where
> >> > necessary.
> >> > > > However, still no luck on the build.
> >> > > >
> >> > > > Here is the output from my latest try:
> >> > > >
> >> > > > bash-3.2$ python setup.py build
> >> > > > running build
> >> > > > running build_py
> >> > > > running build_ext
> >> > > > skipping 'ccplot/hdf.c' Cython extension
> (up-to-date)
> >> > > > building 'ccplot.hdf' extension
> >> > > > clang -fno-strict-aliasing -fno-common -dynamic -g
> >> -Os -pipe
> >> > > -fno-common
> >> > > > -fno-strict-aliasing -fwrapv -mno-fused-madd
> >> -DENABLE_DTRACE
> >> > -DMACOSX
> >> > > > -DNDEBUG -Wall -Wstrict-prototypes
> -Wshorten-64-to-32
> >> > -DNDEBUG -g -Os
> >> > > > -Wall -Wstrict-prototypes -DENABLE_DTRACE -arch
> >> i386 -arch
> >> > x86_64
> >> > > > -I/Users/ryan/Desktop/src/boost_1_53_0 -pipe
> >> -I/usr/include/hdf
> >> > > > -I/usr/local/include/hdf -I/opt/local/include
> >> > > >
> >> > >
> >> >
> >>
> -I/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy/core/include
> >> > > >
> >> > >
> >> >
> >>
> -I/System/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7
> >> > > > -c ccplot/hdf.c -o
> >> build/temp.macosx-10.8-intel-2.7/ccplot/hdf.o
> >> > > > clang: warning: argument unused during
> compilation:
> >> > '-mno-fused-madd'
> >> > > > In file included from ccplot/hdf.c:314:
> >> > > > In file included from
> >> > > >
> >> > >
> >> >
> >>
> /System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy/core/include/numpy/arrayobject.h:14:
> >> > > > In file included from
> >> > > >
> >> > >
> >> >
> >>
> /System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy/core/include/numpy/ndarrayobject.h:26:
> >> > > >
> >> > >
> >> >
> >>
> /System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy/core/include/numpy/__multiarray_api.h:1532:1:
> >> > > > warning:
> >> > > > unused function '_import_array'
> >> [-Wunused-function]
> >> > > > _import_array(void)
> >> > > > ^
> >> > > > In file included from ccplot/hdf.c:315:
> >> > > > In file included from
> >> > > >
> >> > >
> >> >
> >>
> /System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy/core/include/numpy/ufuncobject.h:152:
> >> > > >
> >> > >
> >> >
> >>
> /System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy/core/include/numpy/__ufunc_api.h:226:1:
> >> > > > warning:
> >> > > > unused function '_import_umath'
> >> [-Wunused-function]
> >> > > > _import_umath(void)
> >> > > > ^
> >> > > > 2 warnings generated.
> >> > > > In file included from ccplot/hdf.c:314:
> >> > > > In file included from
> >> > > >
> >> > >
> >> >
> >>
> /System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy/core/include/numpy/arrayobject.h:14:
> >> > > > In file included from
> >> > > >
> >> > >
> >> >
> >>
> /System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy/core/include/numpy/ndarrayobject.h:26:
> >> > > >
> >> > >
> >> >
> >>
> /System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy/core/include/numpy/__multiarray_api.h:1532:1:
> >> > > > warning:
> >> > > > unused function '_import_array'
> >> [-Wunused-function]
> >> > > > _import_array(void)
> >> > > > ^
> >> > > > In file included from ccplot/hdf.c:315:
> >> > > > In file included from
> >> > > >
> >> > >
> >> >
> >>
> /System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy/core/include/numpy/ufuncobject.h:152:
> >> > > >
> >> > >
> >> >
> >>
> /System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy/core/include/numpy/__ufunc_api.h:226:1:
> >> > > > warning:
> >> > > > unused function '_import_umath'
> >> [-Wunused-function]
> >> > > > _import_umath(void)
> >> > > > ^
> >> > > > 2 warnings generated.
> >> > > > clang -bundle -undefined dynamic_lookup -Wl,-F.
> >> -arch i386 -arch
> >> > > x86_64
> >> > > > -L/Users/ryan/Desktop/src/hdf5-1.8.10/hdf5/lib
> >> > > > -I/Users/ryan/Desktop/src/boost_1_53_0
> >> > > > build/temp.macosx-10.8-intel-2.7/ccplot/hdf.o
> >> -lmfhdf -ldf
> >> > -ljpeg
> >> > > -lz -o
> >> > > > build/lib.macosx-10.8-intel-2.7/ccplot/hdf.so
> >> > > > ld: library not found for -lmfhdf
> >> > > > clang: error: linker command failed with exit code
> >> 1 (use -v
> >> > to see
> >> > > > invocation)
> >> > > > error: command 'clang' failed with exit status 1
> >> > > >
> >> > > > Hopefully this is also an easy fix. Best,
> >> > > >
> >> > > > Ryan
> >> > > >
> >> > > >
> >> > > > On Thu, Nov 21, 2013 at 2:10 PM, Peter Kuma
> >> > > <pet...@wa...
> >> <mailto:pet...@wa...> <mailto:pet...@wa...
> >> <mailto:pet...@wa...>>
> >> > <mailto:pet...@wa...
> >> <mailto:pet...@wa...> <mailto:pet...@wa...
> >> <mailto:pet...@wa...>>>
> >> > > > <mailto:pet...@wa...
> >> <mailto:pet...@wa...>
> >> > <mailto:pet...@wa...
> >> <mailto:pet...@wa...>> <mailto:pet...@wa...
> >> <mailto:pet...@wa...>
> >> > <mailto:pet...@wa...
> >> <mailto:pet...@wa...>>>>>
> >> > > wrote:
> >> > > >
> >> > > > Hi Ryan,
> >> > > >
> >> > > > Thanks for the follow-up. It is nice to hear
> >> you find ccplot
> >> > > useful.
> >> > > >
> >> > > > I was afraid there may be more problems. I'm
> >> sure other mac
> >> > > users will
> >> > > > be happy to see this sorted out.
> >> > > >
> >> > > > The reason is that MAX_VAR_DIMS is only
> >> available when HDF4
> >> > > was compiled
> >> > > > with netcdf-3 compatibility. It should be easy
> >> to fix by
> >> > > replacing all
> >> > > > occurrences of MAX_VAR_DIMS with
> H4_MAX_VAR_DIMS.
> >> > > >
> >> > > > Please try an updated version from github:
> >> > > >
> >> > > >
> >> https://github.com/peterkuma/ccplot/archive/master.zip
> >> > > >
> >> > > > Regards,
> >> > > >
> >> > > > Peter
> >> > > >
> >> > > > On 11/21/2013 09:37 PM, Ryan Scott wrote:
> >> > > > > Hello Peter,
> >> > > > >
> >> > > > > I very much appreciate the timely response
> >> and your
> >> > > willingness to
> >> > > > help.
> >> > > > > I was happy to see that a new version of
> >> ccplot was
> >> > > available without
> >> > > > > the PyNIO dependency, which has prevented me
> >> from using it
> >> > > in the
> >> > > > past.
> >> > > > > ccplot appears to be far superior than what
> is
> >> > possible using
> >> > > > Matlab and
> >> > > > > NCAR Command Language!
> >> > > > >
> >> > > > > I have modified line 24 of setup.py to
> reflect
> >> > > '/opt/local/include' as
> >> > > > > well, and I no longer receive the error
> >> regarding
> >> > hntdefs.h.
> >> > > > >
> >> > > > > Unfortunately, though I'm presented with a
> >> new error. To
> >> > > give you as
> >> > > > > much detail as possible, here's the new
> issue:
> >> > > > >
> >> > > > > "bash-3.2$ python setup.py build
> >> > > > > running build
> >> > > > > running build_py
> >> > > > > running build_ext
> >> > > > > skipping 'ccplot/hdf.c' Cython extension
> >> (up-to-date)
> >> > > > > building 'ccplot.hdf' extension
> >> > > > > clang -fno-strict-aliasing -fno-common
> >> -dynamic -g -Os
> >> > -pipe
> >> > > > -fno-common
> >> > > > > -fno-strict-aliasing -fwrapv -mno-fused-madd
> >> > -DENABLE_DTRACE
> >> > > -DMACOSX
> >> > > > > -DNDEBUG -Wall -Wstrict-prototypes
> >> -Wshorten-64-to-32
> >> > > -DNDEBUG -g -Os
> >> > > > > -Wall -Wstrict-prototypes -DENABLE_DTRACE
> >> -arch i386 -arch
> >> > > x86_64
> >> > > > > -I/Users/ryan/Desktop/src/boost_1_53_0 -pipe
> >> > -I/usr/include/hdf
> >> > > > > -I/usr/local/include/hdf
> -I/opt/local/include
> >> > > > >
> >> > > >
> >> > >
> >> >
> >>
> -I/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy/core/include
> >> > > > >
> >> > > >
> >> > >
> >> >
> >>
> -I/System/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7
> >> > > > > -c ccplot/hdf.c -o
> >> > build/temp.macosx-10.8-intel-2.7/ccplot/hdf.o
> >> > > > > clang: warning: argument unused during
> >> compilation:
> >> > > '-mno-fused-madd'
> >> > > > > ccplot/hdf.c:5266:30: error: use of
> >> undeclared identifier
> >> > > > 'MAX_VAR_DIMS'
> >> > > > > __pyx_t_1 = PyInt_FromLong(MAX_VAR_DIMS);
> if
> >> > > (unlikely(!__pyx_t_1))
> >> > > > > {__pyx_filename =...
> >> > > > > ^
> >> > > > > ccplot/hdf.c:7066:30: error: use of
> >> undeclared identifier
> >> > > > 'MAX_VAR_DIMS'
> >> > > > > __pyx_t_1 = PyInt_FromLong(MAX_VAR_DIMS);
> if
> >> > > (unlikely(!__pyx_t_1))
> >> > > > > {__pyx_filename =...
> >> > > > > ^
> >> > > > > 2 errors generated.
> >> > > > > error: command 'clang' failed with exit
> >> status 1"
> >> > > > >
> >> > > > > Perhaps there is an easy fix?
> >> > > > >
> >> > > > > Best,
> >> > > > >
> >> > > > > -Ryan
> >> > > > >
> >> > > > >
> >> > > > >
> >> > > > >
> >> > > > >
> >> > > > >
> >> > > > > On Thu, Nov 21, 2013 at 12:11 AM, Peter Kuma
> >> > > > <pet...@wa...
> >> <mailto:pet...@wa...> <mailto:pet...@wa...
> >> <mailto:pet...@wa...>>
> >> > <mailto:pet...@wa...
> >> <mailto:pet...@wa...> <mailto:pet...@wa...
> >> <mailto:pet...@wa...>>>
> >> > > <mailto:pet...@wa...
> >> <mailto:pet...@wa...> <mailto:pet...@wa...
> >> <mailto:pet...@wa...>>
> >> > <mailto:pet...@wa...
> >> <mailto:pet...@wa...> <mailto:pet...@wa...
> >> <mailto:pet...@wa...>>>>
> >> > > > > <mailto:pet...@wa...
> >> <mailto:pet...@wa...>
> >> > <mailto:pet...@wa...
> >> <mailto:pet...@wa...>>
> >> > > <mailto:pet...@wa...
> >> <mailto:pet...@wa...>
> >> > <mailto:pet...@wa...
> >> <mailto:pet...@wa...>>> <mailto:
> pet...@wa...
> >> <mailto:pet...@wa...>
> >> > <mailto:pet...@wa...
> >> <mailto:pet...@wa...>>
> >> > > <mailto:pet...@wa...
> >> <mailto:pet...@wa...> <mailto:pet...@wa...
> >> <mailto:pet...@wa...>>>>>>
> >> > > > wrote:
> >> > > > >
> >> > > > > On 11/21/2013 02:07 AM, ryan scott
> wrote:
> >> > > > > > I have installed all dependencies for
> >> ccplot.
> >> > However,
> >> > > when
> >> > > > > attempting to build ccplot before
> >> installation, I
> >> > > receive the
> >> > > > > following error message:
> >> > > > > >
> >> > > > > > "ccplot/hdf.c:317:10: fatal error:
> >> 'hntdefs.h' file
> >> > > not found
> >> > > > > > #include "hntdefs.h"
> >> > > > > > ^
> >> > > > > > 1 error generated.
> >> > > > > > error: command 'clang' failed with
> >> exit status 1"
> >> > > > > >
> >> > > > > > I do, however, have the hdf4 library
> >> installed (via
> >> > > > MacPorts), the
> >> > > > > following
> >> > > > > >
> >> > > > > > bash-3.2$ locate hntdefs.h
> >> > > > > > /opt/local/include/hntdefs.h
> >> > > > > >
> >> > > > > > shows that I do have this file. Could
> >> anyone please
> >> > > point me in
> >> > > > > the right direction?
> >> > > > > >
> >> > > > > > Any help is very much appreciated.
> Thanks,
> >> > > > > >
> >> > > > > > Ryan
> >> > > > >
> >> > > > > Dear Ryan,
> >> > > > >
> >> > > > > Sorry - I think this is a problem with
> >> ccplot rather
> >> > > than your
> >> > > > > configuration. It assumes that hdf is
> >> available
> >> > under either
> >> > > > > /usr/include/hdf or
> >> /usr/local/include/hdf, which
> >> > is a valid
> >> > > > assumption
> >> > > > > on linux, but not on mac. For now,
> could you
> >> > please just add
> >> > > > the path to
> >> > > > > hdf_include_dirs in setup.py?
> >> > > > >
> >> > > > > - hdf_include_dirs =
> ['/usr/include/hdf',
> >> > > > '/usr/local/include/hdf']
> >> > > > > + hdf_include_dirs =
> ['/usr/include/hdf',
> >> > > > '/usr/local/include/hdf',
> >> > > > > '/opt/local/include']
> >> > > > >
> >> > > > > (line 24)
> >> > > > >
> >> > > > > Unfortunately, I don't have access to a
> >> mac system for
> >> > > testing
> >> > > > now, so I
> >> > > > > would not find out. Hopefully, darwin
> >> will be good
> >> > > enough for
> >> > > > this. I'll
> >> > > > > try to fix these issues soon.
> >> > > > >
> >> > > > > Thank you very much for reporting the
> >> problem.
> >> > > > >
> >> > > > > Regards,
> >> > > > >
> >> > > > > Peter
> >> > > > >
> >> > > > >
> >> > > >
> >> > > >
> >> > >
> >> > >
> >> >
> >> >
> >>
> >>
> >>
> >
>
>
|
