From: Karol M. L. <kar...@gm...> - 2012-01-28 02:41:38
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Hi, The differences are just due to me using an ultra-stable isntallation on this particular computer. I will test with newer version on another machine (probably tommorrow). - Karol On Jan 27 2012, Martin Rahm wrote: > Hi Karol, > > Interesting. I'm using Python 2.7.1, so different but newer than yours, > with GCC 4.2.1, if that matters. cclib is 1.01 (the latest), and finally, > Numpy 1.5.1, which also is newer than yours. > > It's all on a OS X 10.6.8 machine. > > Clearly there are some external differences, however, going back to older > versions are cumbersome. Does this mean one always have to use older > packages to be sure, or is there a possibility to make cclib work with the > new ones? > > Thanks again for your hard work & with best regards, > Martin > > On Fri, Jan 27, 2012 at 4:51 PM, Karol M. Langner > <kar...@gm...>wrote: > > > Hi Martin, > > > > I've come around to this issue. First of all, in this case I don't get > > the complex number error your report, and my fragcharges sum up nicely. > > That is a good thing, because it means the cause is perhaps external > > to cclib. > > > > I'm using Python 2.6 here, but I assume that would not be a problem. > > My NumPy version is 1.4.1 and I'm using the latest cclib revision from svn. > > What are your version? > > > > - Karol > > > > On Jan 12 2012, Martin Rahm wrote: > > > Hello again, > > > > > > I've come across another case of the "complex number" error. This time > > in a > > > very small diatomic. > > > > > > Running LPA on a M062X/cc-pwCV5Z wave function of ClF, and gets this > > error: > > > > > > [LPA <cclib.parser.data.ccData object at 0x1015ba1d0> INFO] Creating > > > attribute aoresults: [array[2]] > > > > > /Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/cclib/method/lpa.py:99: > > > ComplexWarning: Casting complex values to real discards the imaginary > > part > > > self.aoresults[spin][i] = numpy.multiply(temp1, temp2).astype("d") > > > > > > This is quite cumbersome, since there is really no way of breaking > > symmetry > > > of a linear molecule (which solved the problem for larger molecules)! > > > > > > I've attached my log file, and also my script just in case. > > > > > > I hope you have a quick fix :) > > > > > > Best regards, > > > Martin > > > > > Archive: /tmp/ClF-M06-cc-pwCV5Z.log.zip > > > Length Date Time Name > > > --------- ---------- ----- ---- > > > 8430472 2012-01-11 09:10 ClF-M06-cc-pwCV5Z.log > > > --------- ------- > > > 8430472 1 file > > > > > > > > > ------------------------------------------------------------------------------ > > > RSA(R) Conference 2012 > > > Mar 27 - Feb 2 > > > Save $400 by Jan. 27 > > > Register now! > > > http://p.sf.net/sfu/rsa-sfdev2dev2 > > > > > _______________________________________________ > > > cclib-users mailing list > > > ccl...@li... > > > https://lists.sourceforge.net/lists/listinfo/cclib-users > > > > > > -- > > written by Karol Langner > > Sat Jan 28 01:46:35 CET 2012 > > -- written by Karol Langner Sat Jan 28 03:40:06 CET 2012 |